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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030670 through 18771 annotations produced 3 hits



CG9245 (Pis):

Annotation Number : CG9245
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030670
Gbrowse : chrX:15596545-15597798 (-) // 100.0 //
Probeset : 1636027_at
Accessions : protein= NP_573055; /// NP_727878;, nucleotide= NM_132827; /// NM_167456;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0003881 // CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity // inferred from direct assay /// 0003881 //
FlyMine data for FBgn0030670.
BDGP gene expression has embryonic in situ data for CG9245: 9 pix of staining in 8 body parts.
TRiP has 2 RNAi stocks for FBgn0030670 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030670 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.90None
Head4 00 of 4 0.70None
Eye19 24 of 4 3.19Up
Thoracicoabdominal ganglion4 10 of 4 0.80None
Salivary gland7 40 of 4 1.27None
Crop10 22 of 4 1.70None
Midgut8 10 of 4 1.30None
Tubule1 00 of 4 0.20Down
Hindgut7 00 of 4 1.20None
Heart2 00 of 4 0.40Down
Fat body3 20 of 4 0.47None
Ovary0 00 of 4 0.10Down
Testis0 00 of 4 0.10Down
Male accessory glands6 10 of 4 1.10None
Virgin spermatheca1 00 of 4 0.16Down
Mated spermatheca3 10 of 4 0.48None
Adult carcass7 20 of 4 1.10None
Larval CNS4 10 of 4 0.65None
Larval Salivary gland3 10 of 4 0.53None
Larval midgut2 00 of 4 0.39Down
Larval tubule4 10 of 4 0.70None
Larval hindgut2 00 of 4 0.42Down
Larval fat body7 20 of 4 1.10None
Larval trachea1 10 of 4 0.28Down
Larval carcass0 00 of 4 0.12Down
S2 cells (growing)6 11 of 4 0.99None
Whole fly6 10 of 4



CG9245 (Pis):

Annotation Number : CG9245
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030670
Gbrowse : chrX:15596545-15597798 (-) // 100.0 //
Probeset : 1625595_a_at
Accessions : protein= NP_573055; /// NP_727878;, nucleotide= NM_132827; /// NM_167456;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0003881 // CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity // inferred from direct assay /// 0003881 //
FlyMine data for FBgn0030670.
BDGP gene expression has embryonic in situ data for CG9245: 9 pix of staining in 8 body parts.
TRiP has 2 RNAi stocks for FBgn0030670 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030670 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain490 104 of 4 2.20Up
Head723 604 of 4 3.30Up
Eye2829 834 of 412.73Up
Thoracicoabdominal ganglion313 214 of 4 1.40Up
Salivary gland636 164 of 4 2.86Up
Crop995 314 of 4 4.50Up
Midgut602 154 of 4 2.70Up
Tubule80 64 of 4 0.40Down
Hindgut533 124 of 4 2.40Up
Heart470 274 of 4 2.12Up
Fat body277 394 of 4 1.25None
Ovary194 34 of 4 0.90Down
Testis90 54 of 4 0.40Down
Male accessory glands256 44 of 4 1.20Up
Virgin spermatheca72 54 of 4 0.32Down
Mated spermatheca68 34 of 4 0.31Down
Adult carcass323 224 of 4 1.50Up
Larval CNS151 244 of 4 0.68Down
Larval Salivary gland391 524 of 4 1.76Up
Larval midgut300 194 of 4 1.35Up
Larval tubule431 94 of 4 1.90Up
Larval hindgut229 184 of 4 1.03None
Larval fat body199 204 of 4 0.90None
Larval trachea229 994 of 4 1.03None
Larval carcass159 154 of 4 0.72Down
S2 cells (growing)343 194 of 4 1.54Up
Whole fly222 74 of 4



CG9245 (Pis):

Annotation Number : CG9245
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030670
Gbrowse : chrX:15595477-15597798 (-) // 100.0 //
Probeset : 1627102_at
Accessions : protein= NP_573055; /// NP_727878;, nucleotide= NM_132827; /// NM_167456;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0003881 // CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity // inferred from direct assay /// 0003881 //
FlyMine data for FBgn0030670.
BDGP gene expression has embryonic in situ data for CG9245: 9 pix of staining in 8 body parts.
TRiP has 2 RNAi stocks for FBgn0030670 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030670 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1123 224 of 4 2.00Up
Head1803 814 of 4 3.20Up
Eye4857 924 of 4 8.66Up
Thoracicoabdominal ganglion1134 204 of 4 2.00Up
Salivary gland1902 114 of 4 3.39Up
Crop2454 694 of 4 4.40Up
Midgut992 134 of 4 1.80Up
Tubule1066 514 of 4 1.90Up
Hindgut1154 164 of 4 2.10Up
Heart1462 384 of 4 2.61Up
Fat body1097 1314 of 4 1.96Up
Ovary456 24 of 4 0.80Down
Testis100 44 of 4 0.20Down
Male accessory glands591 114 of 4 1.10None
Virgin spermatheca948 684 of 4 1.69Up
Mated spermatheca823 334 of 4 1.47Up
Adult carcass808 414 of 4 1.40Up
Larval CNS573 334 of 4 1.02None
Larval Salivary gland1440 314 of 4 2.57Up
Larval midgut1091 324 of 4 1.95Up
Larval tubule1027 94 of 4 1.80Up
Larval hindgut905 824 of 4 1.61Up
Larval fat body507 554 of 4 0.90None
Larval trachea578 1984 of 4 1.03None
Larval carcass458 204 of 4 0.82Down
S2 cells (growing)605 274 of 4 1.08None
Whole fly560 234 of 4

Looking for FBgn0030670. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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