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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030671 through 18771 annotations produced 1 hits



(CG8134):

Annotation Number : CG8134
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030671
Gbrowse : chrX:15598157-15599774 (+) // 100.0 //
Probeset : 1632274_at
Accessions : protein= NP_573056;, nucleotide= NM_132828;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030671.
VDRC has 3 RNAi stocks for FBgn0030671 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain162 24 of 4 1.30Up
Head93 74 of 4 0.80Down
Eye159 64 of 4 1.33Up
Thoracicoabdominal ganglion130 54 of 4 1.10None
Salivary gland107 34 of 4 0.89None
Crop120 64 of 4 1.00None
Midgut122 34 of 4 1.00None
Tubule109 14 of 4 0.90Down
Hindgut131 14 of 4 1.10None
Heart138 44 of 4 1.15None
Fat body136 134 of 4 1.13None
Ovary212 34 of 4 1.80Up
Testis72 44 of 4 0.60Down
Male accessory glands69 24 of 4 0.60Down
Virgin spermatheca93 54 of 4 0.78Down
Mated spermatheca89 64 of 4 0.74Down
Adult carcass116 84 of 4 1.00None
Larval CNS118 94 of 4 0.99None
Larval Salivary gland138 44 of 4 1.15None
Larval midgut132 24 of 4 1.10None
Larval tubule115 14 of 4 1.00None
Larval hindgut104 54 of 4 0.87None
Larval fat body96 44 of 4 0.80Down
Larval trachea128 74 of 4 1.07None
Larval carcass127 64 of 4 1.06None
S2 cells (growing)198 34 of 4 1.65Up
Whole fly120 64 of 4

Looking for FBgn0030671. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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