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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030674 through 18771 annotations produced 1 hits



(CG8184):

Annotation Number : CG8184
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030674
Gbrowse : chrX:15608147-15625521 (+) // 100.0 //
Probeset : 1634771_a_at
Accessions : protein= NP_573059;, nucleotide= NM_132831;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0030674.
Homophila reports that CG8184 is a close match (4e-30) to human gene HERC2;SHEP1 (NP_004658), a gene associated with [Skin/hair/eye pigmentation 1, blond/brown hair], 227220 (3);[Skin/hair/eye pigmentation 1, blue/nonblue eyes], 227220 (3).
TRiP has 2 RNAi stocks for FBgn0030674 available for purchase.
VDRC has 1 RNAi stocks for FBgn0030674 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain142 ± 44 of 4 1.70Up
Head47 ± 74 of 4 0.60Down
Eye118 ± 114 of 4 1.43Up
Thoracicoabdominal ganglion107 ± 124 of 4 1.30None
Salivary gland64 ± 44 of 4 0.78Down
Crop86 ± 64 of 4 1.00None
Midgut81 ± 24 of 4 1.00None
Tubule51 ± 44 of 4 0.60Down
Hindgut93 ± 54 of 4 1.10None
Heart227 ± 154 of 4 2.75Up
Fat body95 ± 44 of 4 1.16Up
Ovary150 ± 44 of 4 1.80Up
Testis82 ± 14 of 4 1.00None
Male accessory glands83 ± 34 of 4 1.00None
Virgin spermatheca47 ± 14 of 4 0.57Down
Mated spermatheca66 ± 24 of 4 0.80Down
Adult carcass63 ± 84 of 4 0.80None
Larval CNS153 ± 104 of 4 1.86Up
Larval Salivary gland118 ± 64 of 4 1.43Up
Larval midgut69 ± 44 of 4 0.84None
Larval tubule134 ± 64 of 4 1.60Up
Larval hindgut95 ± 44 of 4 1.15None
Larval fat body110 ± 104 of 4 1.30None
Larval trachea222 ± 244 of 4 2.70Up
Larval carcass87 ± 74 of 4 1.06None
S2 cells (growing)142 ± 14 of 4 1.73Up
Whole fly82 ± 44 of 4

Looking for FBgn0030674. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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