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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030676 through 18771 annotations produced 1 hits



(CG12379):

Annotation Number : CG12379
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030676
Gbrowse : chrX:15627274-15627526 (-) // 100.0 //
Probeset : 1632707_at
Accessions : protein= NP_573061;, nucleotide= NM_132833;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030676.
BioGrid reports that CG12379 interacts with CG17802 CG2091 CG32779 CG4286 CG13025 CG17385 CG2985 CG5962 CG8542 .
VDRC has 3 RNAi stocks for FBgn0030676 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 44 of 4 1.40Up
Head58 ± 44 of 4 1.20None
Eye60 ± 24 of 4 1.26Up
Thoracicoabdominal ganglion95 ± 94 of 4 2.00Up
Salivary gland44 ± 44 of 4 0.92None
Crop45 ± 44 of 4 1.00None
Midgut31 ± 10 of 4 0.70Down
Tubule66 ± 24 of 4 1.40Up
Hindgut42 ± 14 of 4 0.90None
Heart40 ± 14 of 4 0.83None
Fat body45 ± 24 of 4 0.94None
Ovary59 ± 34 of 4 1.20None
Testis45 ± 34 of 4 0.90None
Male accessory glands42 ± 23 of 4 0.90None
Virgin spermatheca57 ± 44 of 4 1.19None
Mated spermatheca69 ± 14 of 4 1.45Up
Adult carcass38 ± 43 of 4 0.80None
Larval CNS94 ± 64 of 4 1.97Up
Larval Salivary gland33 ± 24 of 4 0.70Down
Larval midgut24 ± 21 of 4 0.52Down
Larval tubule49 ± 34 of 4 1.00None
Larval hindgut38 ± 14 of 4 0.81Down
Larval fat body27 ± 52 of 4 0.60Down
Larval trachea72 ± 94 of 4 1.50Up
Larval carcass50 ± 34 of 4 1.05None
S2 cells (growing)70 ± 14 of 4 1.46Up
Whole fly48 ± 34 of 4

Looking for FBgn0030676. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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