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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030679 through 18771 annotations produced 1 hits


Annotation Number : CG8206
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030679
Gbrowse : chrX:15633278-15634275 (+) // 100.0 //
Probeset : 1639016_at
Accessions : protein= NP_573064;, nucleotide= NM_132836;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030679.
BDGP gene expression has embryonic in situ data for CG8206: 4 pix of staining in 1 body parts.
BioGrid reports that CG8206 interacts with CG8400 CG9902 CG8603 .
VDRC has 2 RNAi stocks for FBgn0030679 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain325 104 of 4 0.80Down
Head568 144 of 4 1.40Up
Eye672 254 of 4 1.63Up
Thoracicoabdominal ganglion330 74 of 4 0.80Down
Salivary gland335 224 of 4 0.81None
Crop636 184 of 4 1.50Up
Midgut334 74 of 4 0.80Down
Tubule1406 854 of 4 3.40Up
Hindgut722 164 of 4 1.80Up
Heart562 304 of 4 1.37Up
Fat body470 404 of 4 1.14None
Ovary291 94 of 4 0.70Down
Testis88 14 of 4 0.20Down
Male accessory glands131 74 of 4 0.30Down
Virgin spermatheca724 254 of 4 1.76Up
Mated spermatheca460 344 of 4 1.12None
Adult carcass1047 454 of 4 2.50Up
Larval CNS160 84 of 4 0.39Down
Larval Salivary gland201 64 of 4 0.49Down
Larval midgut509 114 of 4 1.24Up
Larval tubule2107 1364 of 4 5.10Up
Larval hindgut610 174 of 4 1.49Up
Larval fat body833 1114 of 4 2.00Up
Larval trachea296 324 of 4 0.72Down
Larval carcass500 424 of 4 1.22None
S2 cells (growing)276 24 of 4 0.67Down
Whole fly411 244 of 4

Looking for FBgn0030679. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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