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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030680 through 18771 annotations produced 1 hits



(CG8944):

Annotation Number : CG8944
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030680
Gbrowse : chrX:15635367-15640240 (-) // 100.0 //
Probeset : 1636805_a_at
Accessions : protein= NP_573065; /// NP_727889;, nucleotide= NM_132837; /// NM_167460;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0030680.
Homophila reports that CG8944 is a close match (7e-12) to human gene FKLF;FKLF1;KLF11;MODY7;TIEG2 (NP_003588), a gene associated with Maturity-onset diabetes of the young, type VII, 610508 (3).
TRiP has 1 RNAi stocks for FBgn0030680 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030680 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 ± 44 of 4 2.50Up
Head29 ± 14 of 4 0.90None
Eye60 ± 34 of 4 1.93Up
Thoracicoabdominal ganglion54 ± 44 of 4 1.70Up
Salivary gland49 ± 54 of 4 1.59Up
Crop40 ± 24 of 4 1.30None
Midgut24 ± 14 of 4 0.80None
Tubule21 ± 04 of 4 0.70Down
Hindgut40 ± 24 of 4 1.30None
Heart34 ± 24 of 4 1.12None
Fat body31 ± 64 of 4 1.01None
Ovary84 ± 34 of 4 2.70Up
Testis7 ± 12 of 4 0.20Down
Male accessory glands32 ± 24 of 4 1.00None
Virgin spermatheca38 ± 44 of 4 1.22None
Mated spermatheca45 ± 34 of 4 1.44Up
Adult carcass19 ± 43 of 4 0.60None
Larval CNS148 ± 84 of 4 4.74Up
Larval Salivary gland43 ± 24 of 4 1.40Up
Larval midgut26 ± 14 of 4 0.84None
Larval tubule29 ± 24 of 4 0.90None
Larval hindgut39 ± 04 of 4 1.27None
Larval fat body22 ± 14 of 4 0.70None
Larval trachea89 ± 74 of 4 2.86Up
Larval carcass27 ± 24 of 4 0.89None
S2 cells (growing)47 ± 14 of 4 1.51Up
Whole fly31 ± 44 of 4

Looking for FBgn0030680. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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