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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030687 through 18771 annotations produced 1 hits



(CG17209):

Annotation Number : CG17209
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030687
Gbrowse : chrX:15657035-15663548 (+) // 100.0 //
Probeset : 1638737_at
Accessions : protein= NP_001096987;, nucleotide= NM_001103517;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005666 // DNA-directed RNA polymerase III complex // infe
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inf
FlyMine data for FBgn0030687.
BioGrid reports that CG17209 interacts with CG5650 .
VDRC has 2 RNAi stocks for FBgn0030687 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 ± 24 of 4 0.70Down
Head29 ± 44 of 4 0.40Down
Eye40 ± 34 of 4 0.53Down
Thoracicoabdominal ganglion50 ± 24 of 4 0.70Down
Salivary gland101 ± 54 of 4 1.32Up
Crop55 ± 24 of 4 0.70Down
Midgut131 ± 104 of 4 1.70Up
Tubule169 ± 154 of 4 2.20Up
Hindgut45 ± 14 of 4 0.60Down
Heart30 ± 14 of 4 0.40Down
Fat body36 ± 64 of 4 0.48Down
Ovary169 ± 44 of 4 2.20Up
Testis23 ± 04 of 4 0.30Down
Male accessory glands74 ± 44 of 4 1.00None
Virgin spermatheca62 ± 24 of 4 0.81Down
Mated spermatheca88 ± 24 of 4 1.16Up
Adult carcass33 ± 34 of 4 0.40Down
Larval CNS111 ± 24 of 4 1.46Up
Larval Salivary gland96 ± 44 of 4 1.26Up
Larval midgut109 ± 24 of 4 1.43Up
Larval tubule67 ± 44 of 4 0.90None
Larval hindgut49 ± 24 of 4 0.65Down
Larval fat body35 ± 24 of 4 0.50Down
Larval trachea76 ± 224 of 4 1.00None
Larval carcass52 ± 74 of 4 0.68Down
S2 cells (growing)126 ± 24 of 4 1.65Up
Whole fly76 ± 14 of 4

Looking for FBgn0030687. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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