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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030688 through 18771 annotations produced 1 hits



(CG8952):

Annotation Number : CG8952
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030688
Gbrowse : chrX:15659502-15660462 (-) // 100.0 //
Probeset : 1629007_at
Accessions : protein= NP_573072;, nucleotide= NM_132844;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004175 // endopeptidase activity // non-tracea
FlyMine data for FBgn0030688.
BDGP gene expression has embryonic in situ data for CG8952: 8 pix of staining in 1 body parts.
Homophila reports that CG8952 is a close match (3e-11) to human gene EMSP1;KLK4;PRSS17 (NP_004908), a gene associated with Amelogenesis imperfecta, pigmented hypomaturation type, 204700 (3).
VDRC has 1 RNAi stocks for FBgn0030688 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head10 ± 42 of 4 0.00Down
Eye6 ± 11 of 4 0.01Down
Thoracicoabdominal ganglion5 ± 00 of 4 0.00Down
Salivary gland11 ± 31 of 4 0.02Down
Crop10 ± 23 of 4 0.00Down
Midgut4349 ± 1604 of 4 8.80Up
Tubule3105 ± 8894 of 4 6.30Up
Hindgut519 ± 224 of 4 1.10None
Heart6 ± 23 of 4 0.01Down
Fat body10 ± 73 of 4 0.02Down
Ovary3 ± 00 of 4 0.00Down
Testis7 ± 22 of 4 0.00Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca6 ± 22 of 4 0.01Down
Mated spermatheca6 ± 11 of 4 0.01Down
Adult carcass14 ± 22 of 4 0.00Down
Larval CNS3 ± 14 of 4 0.01Down
Larval Salivary gland5 ± 00 of 4 0.01Down
Larval midgut4062 ± 904 of 4 8.24Up
Larval tubule1933 ± 324 of 4 3.90Up
Larval hindgut473 ± 364 of 4 0.96None
Larval fat body15 ± 13 of 4 0.00Down
Larval trachea7 ± 92 of 4 0.01Down
Larval carcass7 ± 11 of 4 0.01Down
S2 cells (growing)4 ± 01 of 4 0.01Down
Whole fly492 ± 654 of 4

Looking for FBgn0030688. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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