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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030692 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein S30 (mRpS30):

Annotation Number : CG8470
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030692
Gbrowse : chrX:15680103-15682081 (+) // 100.0 //
Probeset : 1623678_at
Accessions : protein= NP_511167;, nucleotide= NM_078612;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0030692.
BDGP gene expression has embryonic in situ data for mRpS30: 15 pix of staining in 16 body parts.
VDRC has 2 RNAi stocks for FBgn0030692 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain257 ± 84 of 4 0.80Down
Head195 ± 74 of 4 0.60Down
Eye66 ± 24 of 4 0.22Down
Thoracicoabdominal ganglion338 ± 94 of 4 1.10None
Salivary gland229 ± 44 of 4 0.76Down
Crop219 ± 44 of 4 0.70Down
Midgut244 ± 84 of 4 0.80Down
Tubule322 ± 94 of 4 1.10Up
Hindgut349 ± 74 of 4 1.20Up
Heart159 ± 64 of 4 0.52Down
Fat body218 ± 324 of 4 0.72Down
Ovary438 ± 44 of 4 1.40Up
Testis83 ± 54 of 4 0.30Down
Male accessory glands95 ± 54 of 4 0.30Down
Virgin spermatheca263 ± 44 of 4 0.87None
Mated spermatheca251 ± 284 of 4 0.83None
Adult carcass253 ± 94 of 4 0.80Down
Larval CNS381 ± 164 of 4 1.26Up
Larval Salivary gland254 ± 84 of 4 0.84Down
Larval midgut227 ± 194 of 4 0.75Down
Larval tubule136 ± 44 of 4 0.50Down
Larval hindgut469 ± 374 of 4 1.55Up
Larval fat body79 ± 54 of 4 0.30Down
Larval trachea211 ± 324 of 4 0.70Down
Larval carcass237 ± 334 of 4 0.78None
S2 cells (growing)333 ± 34 of 4 1.10None
Whole fly303 ± 144 of 4

Looking for FBgn0030692. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime