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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030696 through 18771 annotations produced 1 hits


Annotation Number : CG8509
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030696
Gbrowse : chrX:15703587-15704987 (+) // 100.0 //
Probeset : 1634615_at
Accessions : protein= NP_573079;, nucleotide= NM_132851;
Interpro : 0008160 // protein tyrosine phosphatase activator activity // inferred from sequence or structural similarity /// 001921
FlyMine data for FBgn0030696.
BDGP gene expression has embryonic in situ data for CG8509: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030696 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 01 of 4 0.20Down
Head5 10 of 4 0.30Down
Eye3 00 of 4 0.15Down
Thoracicoabdominal ganglion5 20 of 4 0.30Down
Salivary gland11 50 of 4 0.51None
Crop6 20 of 4 0.30Down
Midgut6 30 of 4 0.30Down
Tubule4 10 of 4 0.20Down
Hindgut4 11 of 4 0.20Down
Heart2 00 of 4 0.10Down
Fat body7 22 of 4 0.35Down
Ovary2 00 of 4 0.10Down
Testis232 74 of 410.80Up
Male accessory glands10 20 of 4 0.50Down
Virgin spermatheca3 10 of 4 0.14Down
Mated spermatheca2 00 of 4 0.09Down
Adult carcass5 20 of 4 0.20Down
Larval CNS3 01 of 4 0.17Down
Larval Salivary gland8 10 of 4 0.38Down
Larval midgut6 10 of 4 0.30Down
Larval tubule8 10 of 4 0.40Down
Larval hindgut5 00 of 4 0.26Down
Larval fat body34 104 of 4 1.60None
Larval trachea5 50 of 4 0.24Down
Larval carcass5 01 of 4 0.27Down
S2 cells (growing)3 00 of 4 0.17Down
Whole fly21 14 of 4

Looking for FBgn0030696. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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