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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030697 through 18771 annotations produced 1 hits


(CG8565):

Annotation Number : CG8565
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030697
Gbrowse : chrX:15731862-15735093 (+) // 100.0 //
Probeset : 1634499_at
Accessions : protein= NP_573080;, nucleotide= NM_132852;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0030697.
VDRC has 1 RNAi stocks for FBgn0030697 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.00Down
Head5 ± 20 of 4 0.00Down
Eye3 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion6 ± 20 of 4 0.00Down
Salivary gland16 ± 80 of 4 0.13Down
Crop5 ± 10 of 4 0.00Down
Midgut15 ± 40 of 4 0.10Down
Tubule4 ± 00 of 4 0.00Down
Hindgut5 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body21 ± 121 of 4 0.16Down
Ovary5 ± 10 of 4 0.00Down
Testis1590 ± 244 of 411.80Up
Male accessory glands10 ± 30 of 4 0.10Down
Virgin spermatheca23 ± 32 of 4 0.17Down
Mated spermatheca30 ± 103 of 4 0.22Down
Adult carcass11 ± 20 of 4 0.10Down
Larval CNS8 ± 30 of 4 0.06Down
Larval Salivary gland8 ± 00 of 4 0.06Down
Larval midgut18 ± 00 of 4 0.13Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut3 ± 00 of 4 0.02Down
Larval fat body326 ± 1724 of 4 2.40None
Larval trachea9 ± 81 of 4 0.07Down
Larval carcass11 ± 10 of 4 0.08Down
S2 cells (growing)8 ± 20 of 4 0.06Down
Whole fly134 ± 114 of 4

Looking for FBgn0030697. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime