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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030699 through 18771 annotations produced 1 hits



(CG8578):

Annotation Number : CG8578
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030699
Gbrowse : chrX:15738529-15741660 (+) // 100.0 //
Probeset : 1631790_at
Accessions : protein= NP_573082;, nucleotide= NM_132854;
Interpro : 0042802 // identical protein binding // inferred from physical interaction
FlyMine data for FBgn0030699.
BioGrid reports that CG8578 interacts with CG8578 .
VDRC has 3 RNAi stocks for FBgn0030699 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain193 ± 74 of 4 1.60Up
Head105 ± 84 of 4 0.80None
Eye94 ± 34 of 4 0.76Down
Thoracicoabdominal ganglion155 ± 24 of 4 1.30Up
Salivary gland116 ± 164 of 4 0.94None
Crop160 ± 124 of 4 1.30None
Midgut99 ± 64 of 4 0.80Down
Tubule154 ± 64 of 4 1.20Up
Hindgut140 ± 44 of 4 1.10Up
Heart109 ± 14 of 4 0.88Down
Fat body86 ± 104 of 4 0.70Down
Ovary297 ± 74 of 4 2.40Up
Testis36 ± 24 of 4 0.30Down
Male accessory glands64 ± 34 of 4 0.50Down
Virgin spermatheca77 ± 84 of 4 0.62Down
Mated spermatheca83 ± 24 of 4 0.67Down
Adult carcass95 ± 44 of 4 0.80Down
Larval CNS184 ± 64 of 4 1.49Up
Larval Salivary gland133 ± 94 of 4 1.08None
Larval midgut160 ± 134 of 4 1.29None
Larval tubule216 ± 134 of 4 1.70Up
Larval hindgut180 ± 44 of 4 1.46Up
Larval fat body106 ± 34 of 4 0.90Down
Larval trachea167 ± 244 of 4 1.35Up
Larval carcass181 ± 74 of 4 1.46Up
S2 cells (growing)320 ± 124 of 4 2.58Up
Whole fly124 ± 44 of 4

Looking for FBgn0030699. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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