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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030700 through 18771 annotations produced 1 hits



(CG15914):

Annotation Number : CG15914
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030700
Gbrowse : chrX:15747478-15748740 (+) // 100.0 //
Probeset : 1639206_at
Accessions : protein= NP_573084;, nucleotide= NM_132856;
Interpro : "0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity
FlyMine data for FBgn0030700.
BioGrid reports that CG15914 interacts with CG8079 .
VDRC has 1 RNAi stocks for FBgn0030700 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 14 of 4 0.50Down
Head17 ± 14 of 4 0.60Down
Eye15 ± 14 of 4 0.54Down
Thoracicoabdominal ganglion18 ± 23 of 4 0.60Down
Salivary gland37 ± 23 of 4 1.28None
Crop29 ± 24 of 4 1.00None
Midgut28 ± 23 of 4 1.00None
Tubule35 ± 14 of 4 1.20Up
Hindgut28 ± 04 of 4 1.00None
Heart36 ± 24 of 4 1.24None
Fat body35 ± 44 of 4 1.20None
Ovary47 ± 24 of 4 1.60Up
Testis10 ± 14 of 4 0.40Down
Male accessory glands19 ± 13 of 4 0.70Down
Virgin spermatheca23 ± 24 of 4 0.80None
Mated spermatheca22 ± 14 of 4 0.76Down
Adult carcass28 ± 34 of 4 1.00None
Larval CNS23 ± 24 of 4 0.79Down
Larval Salivary gland26 ± 34 of 4 0.88None
Larval midgut18 ± 12 of 4 0.62Down
Larval tubule33 ± 14 of 4 1.10None
Larval hindgut23 ± 13 of 4 0.80Down
Larval fat body31 ± 34 of 4 1.10None
Larval trachea32 ± 34 of 4 1.10None
Larval carcass19 ± 04 of 4 0.65Down
S2 cells (growing)28 ± 24 of 4 0.95None
Whole fly29 ± 04 of 4

Looking for FBgn0030700. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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