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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030703 through 18771 annotations produced 1 hits



CG9066 (MSBP):

Annotation Number : CG9066
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030703
Gbrowse : chrX:15781594-15784125 (-) // 100.0 //
Probeset : 1623481_at
Accessions : protein= NP_001162765; /// NP_573087;, nucleotide= NM_001169294; /// NM_132859;
Pathway : 0005886 // plasma membrane // inferred from direct assay
Interpro : 0020037 // heme binding // inferred from electronic annotation /// 0035100 // ecdysone binding // inferred from direct a
FlyMine data for FBgn0030703.
BDGP gene expression has embryonic in situ data for CG9066: 17 pix of staining in 8 body parts.
VDRC has 6 RNAi stocks for FBgn0030703 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain440 ± 114 of 4 0.50Down
Head859 ± 484 of 4 0.90None
Eye444 ± 194 of 4 0.49Down
Thoracicoabdominal ganglion556 ± 94 of 4 0.60Down
Salivary gland1049 ± 184 of 4 1.15None
Crop2039 ± 634 of 4 2.20Up
Midgut1332 ± 394 of 4 1.50Up
Tubule1107 ± 504 of 4 1.20Up
Hindgut1342 ± 144 of 4 1.50Up
Heart2773 ± 964 of 4 3.03Up
Fat body3546 ± 2514 of 4 3.88Up
Ovary730 ± 94 of 4 0.80Down
Testis358 ± 24 of 4 0.40Down
Male accessory glands782 ± 444 of 4 0.90None
Virgin spermatheca1364 ± 744 of 4 1.49Up
Mated spermatheca1188 ± 254 of 4 1.30Up
Adult carcass2373 ± 1164 of 4 2.60Up
Larval CNS469 ± 344 of 4 0.51Down
Larval Salivary gland605 ± 304 of 4 0.66Down
Larval midgut1113 ± 334 of 4 1.22Up
Larval tubule1602 ± 554 of 4 1.80Up
Larval hindgut853 ± 194 of 4 0.93None
Larval fat body1415 ± 1474 of 4 1.50Up
Larval trachea570 ± 354 of 4 0.62Down
Larval carcass853 ± 484 of 4 0.93None
S2 cells (growing)533 ± 194 of 4 0.58Down
Whole fly914 ± 524 of 4

Looking for FBgn0030703. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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