Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030706 through 18771 annotations produced 1 hits


yolkless-like (CG8909):

Annotation Number : CG8909
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030706
Gbrowse : chrX:15806104-15814603 (+) // 99.93 //
Probeset : 1628419_a_at
Accessions : protein= NP_001162769; /// NP_727914;, nucleotide= NM_001169298; /// NM_167474;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0005041 // low-density lipoprotein r
FlyMine data for FBgn0030706.
BDGP gene expression has embryonic in situ data for CG8909: 11 pix of staining in 3 body parts.
Homophila reports that CG8909 is a close match (5e-11) to human gene PROS1 (NP_000304), a gene associated with Thrombophilia due to protein S deficiency, 612336 (3).
TRiP has 2 RNAi stocks for FBgn0030706 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030706 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain897 ± 364 of 431.60Up
Head242 ± 164 of 4 8.50Up
Eye32 ± 24 of 4 1.14None
Thoracicoabdominal ganglion767 ± 314 of 427.00Up
Salivary gland3 ± 10 of 4 0.13Down
Crop1 ± 00 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 10 of 4 0.00Down
Heart4 ± 11 of 4 0.14Down
Fat body6 ± 30 of 4 0.22Down
Ovary0 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands2 ± 10 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.03Down
Mated spermatheca3 ± 00 of 4 0.11Down
Adult carcass6 ± 10 of 4 0.20Down
Larval CNS492 ± 344 of 417.34Up
Larval Salivary gland6 ± 00 of 4 0.23Down
Larval midgut0 ± 00 of 4 0.03Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.05Down
Larval fat body0 ± 00 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.05Down
Larval carcass0 ± 00 of 4 0.02Down
S2 cells (growing)2 ± 00 of 4 0.09Down
Whole fly28 ± 44 of 4

Looking for FBgn0030706. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime