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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030707 through 18771 annotations produced 1 hits



(CG8916):

Annotation Number : CG8916
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030707
Gbrowse : chrX:15816790-15818558 (+) // 100.0 //
Probeset : 1629962_at
Accessions : protein= NP_001162770; /// NP_573090;, nucleotide= NM_001169299; /// NM_132862;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004890 // GABA-A receptor activity // inferred from sequence or structural similarity /// 0004890 // GABA-A receptor ac
FlyMine data for FBgn0030707.
Homophila reports that CG8916 is a close match (3e-42) to human gene CAE2;ECA2;GABRG2;GEFSP3 (NP_944493), a gene associated with Epilepsy, childhood absence, 2, 607681 (3);Epilepsy, generalized, with febrile seizures plus, type 3, 604233 (3);Febrile convulsions, familial, 8, 611277 (3);Myoclonic epilepsy, severe, of infancy, 607208 (3).
TRiP has 2 RNAi stocks for FBgn0030707 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030707 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain240 ± 24 of 432.20Up
Head72 ± 24 of 4 9.80Up
Eye78 ± 54 of 410.55Up
Thoracicoabdominal ganglion8 ± 00 of 4 1.20None
Salivary gland7 ± 50 of 4 0.98None
Crop6 ± 30 of 4 0.90None
Midgut2 ± 10 of 4 0.40Down
Tubule2 ± 00 of 4 0.30Down
Hindgut4 ± 10 of 4 0.50None
Heart2 ± 10 of 4 0.35Down
Fat body5 ± 20 of 4 0.73None
Ovary1 ± 00 of 4 0.20Down
Testis1 ± 00 of 4 0.20Down
Male accessory glands6 ± 10 of 4 0.80None
Virgin spermatheca4 ± 10 of 4 0.58None
Mated spermatheca3 ± 20 of 4 0.49None
Adult carcass5 ± 10 of 4 0.70None
Larval CNS4 ± 20 of 4 0.56None
Larval Salivary gland3 ± 20 of 4 0.49None
Larval midgut5 ± 10 of 4 0.71None
Larval tubule3 ± 10 of 4 0.40None
Larval hindgut3 ± 10 of 4 0.45Down
Larval fat body5 ± 10 of 4 0.70None
Larval trachea3 ± 30 of 4 0.51None
Larval carcass3 ± 10 of 4 0.53None
S2 cells (growing)3 ± 10 of 4 0.50None
Whole fly7 ± 11 of 4

Looking for FBgn0030707. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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