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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030710 through 18771 annotations produced 1 hits



(CG8924):

Annotation Number : CG8924
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030710
Gbrowse : chrX:15835111-15838487 (+) // 100.0 //
Probeset : 1636096_at
Accessions : protein= NP_573091; /// NP_996472;, nucleotide= NM_132863; /// NM_206749;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author stateme
FlyMine data for FBgn0030710.
BDGP gene expression has embryonic in situ data for CG8924: 12 pix of staining in 1 body parts.
BioGrid reports that CG8924 interacts with CG8924 CG9291 .
TRiP has 3 RNAi stocks for FBgn0030710 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030710 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain220 ± 74 of 4 1.70Up
Head52 ± 24 of 4 0.40Down
Eye30 ± 24 of 4 0.24Down
Thoracicoabdominal ganglion174 ± 54 of 4 1.40Up
Salivary gland5 ± 20 of 4 0.04Down
Crop23 ± 14 of 4 0.20Down
Midgut6 ± 21 of 4 0.10Down
Tubule5 ± 20 of 4 0.00Down
Hindgut14 ± 13 of 4 0.10Down
Heart5 ± 11 of 4 0.04Down
Fat body2 ± 10 of 4 0.02Down
Ovary396 ± 94 of 4 3.10Up
Testis17 ± 14 of 4 0.10Down
Male accessory glands5 ± 10 of 4 0.00Down
Virgin spermatheca5 ± 10 of 4 0.04Down
Mated spermatheca3 ± 10 of 4 0.03Down
Adult carcass6 ± 20 of 4 0.10Down
Larval CNS216 ± 124 of 4 1.71Up
Larval Salivary gland7 ± 11 of 4 0.06Down
Larval midgut6 ± 21 of 4 0.05Down
Larval tubule5 ± 10 of 4 0.00Down
Larval hindgut18 ± 14 of 4 0.14Down
Larval fat body8 ± 21 of 4 0.10Down
Larval trachea26 ± 34 of 4 0.21Down
Larval carcass17 ± 23 of 4 0.14Down
S2 cells (growing)58 ± 24 of 4 0.46Down
Whole fly126 ± 54 of 4

Looking for FBgn0030710. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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