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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030718 through 18771 annotations produced 1 hits



NADH ubiquinone oxidoreductase 20 kDa /// erupted (CG9172 /// TSG101):

Annotation Number : CG9172
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030718
Gbrowse : chrX:15879876-15880791 (-) // 100.0 //
Probeset : 1636029_s_at
Accessions : protein= NP_573097; /// NP_727921;, nucleotide= NM_132869; /// NM_167476;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0008340 // determination of adult lifespan //
Interpro : light reaction // inferred from electronic annotation /// 0032981 // mitochondrial respiratory chain complex I assembly
FlyMine data for FBgn0030718.
BDGP gene expression has embryonic in situ data for CG9172: 14 pix of staining in 12 body parts.
Homophila reports that CG9172 is a close match (1e-65) to human gene NDUFS7;PSST (NP_077718), a gene associated with Leigh syndrome, 256000 (3).
VDRC has 4 RNAi stocks for FBgn0030718 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1066 ± 204 of 4 1.10None
Head1316 ± 404 of 4 1.30Up
Eye1877 ± 464 of 4 1.88Up
Thoracicoabdominal ganglion1344 ± 264 of 4 1.30Up
Salivary gland1035 ± 324 of 4 1.04None
Crop939 ± 174 of 4 0.90None
Midgut1087 ± 204 of 4 1.10None
Tubule1064 ± 504 of 4 1.10None
Hindgut1560 ± 174 of 4 1.60Up
Heart1526 ± 324 of 4 1.53Up
Fat body1198 ± 914 of 4 1.20Up
Ovary466 ± 44 of 4 0.50Down
Testis149 ± 24 of 4 0.10Down
Male accessory glands601 ± 134 of 4 0.60Down
Virgin spermatheca952 ± 624 of 4 0.96None
Mated spermatheca865 ± 184 of 4 0.87None
Adult carcass2425 ± 524 of 4 2.40Up
Larval CNS592 ± 374 of 4 0.59Down
Larval Salivary gland715 ± 344 of 4 0.72Down
Larval midgut724 ± 304 of 4 0.73Down
Larval tubule626 ± 474 of 4 0.60Down
Larval hindgut932 ± 524 of 4 0.94None
Larval fat body358 ± 344 of 4 0.40Down
Larval trachea781 ± 604 of 4 0.78Down
Larval carcass898 ± 304 of 4 0.90None
S2 cells (growing)816 ± 164 of 4 0.82None
Whole fly996 ± 624 of 4

Looking for FBgn0030718. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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