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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030720 through 18771 annotations produced 1 hits



(CG8939):

Annotation Number : CG8939
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030720
Gbrowse : chrX:15891069-15893732 (+) // 100.0 //
Probeset : 1636852_at
Accessions : protein= NP_573099;, nucleotide= NM_132871;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structur
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // infe
FlyMine data for FBgn0030720.
BDGP gene expression has embryonic in situ data for CG8939: 4 pix of staining in 1 body parts.
Homophila reports that CG8939 is a close match (8e-35) to human gene FTSJ1;JM23;MRX44;MRX9;SPB1 (NP_036412), a gene associated with Mental retardation, X-linked-9, 309549 (3).
VDRC has 2 RNAi stocks for FBgn0030720 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 24 of 4 0.40Down
Head47 14 of 4 0.50Down
Eye30 14 of 4 0.32Down
Thoracicoabdominal ganglion36 43 of 4 0.40Down
Salivary gland37 40 of 4 0.39Down
Crop63 24 of 4 0.60Down
Midgut56 43 of 4 0.60Down
Tubule61 84 of 4 0.60Down
Hindgut61 24 of 4 0.60Down
Heart38 24 of 4 0.40Down
Fat body66 84 of 4 0.69Down
Ovary196 34 of 4 2.00Up
Testis35 24 of 4 0.40Down
Male accessory glands128 74 of 4 1.30Up
Virgin spermatheca43 34 of 4 0.45Down
Mated spermatheca72 54 of 4 0.75Down
Adult carcass58 93 of 4 0.60Down
Larval CNS133 64 of 4 1.38Up
Larval Salivary gland93 84 of 4 0.97None
Larval midgut37 40 of 4 0.38Down
Larval tubule22 10 of 4 0.20Down
Larval hindgut55 54 of 4 0.58Down
Larval fat body19 50 of 4 0.20Down
Larval trachea139 254 of 4 1.44Up
Larval carcass91 194 of 4 0.94None
S2 cells (growing)151 144 of 4 1.56Up
Whole fly97 74 of 4

Looking for FBgn0030720. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime