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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030723 through 18771 annotations produced 1 hits

dpr18 (dpr18):

Annotation Number : CG14948
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030723
Gbrowse : chrX:15957773-15964337 (+) // 100.0 //
Probeset : 1633415_at
Accessions : protein= NP_573102;, nucleotide= NM_132874;
FlyMine data for FBgn0030723.
BDGP gene expression has embryonic in situ data for CG14948: 6 pix of staining in 3 body parts.
TRiP has 1 RNAi stocks for FBgn0030723 available for purchase.
VDRC has 6 RNAi stocks for FBgn0030723 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain732 154 of 429.80Up
Head153 144 of 4 6.20Up
Eye42 54 of 4 1.73Up
Thoracicoabdominal ganglion630 244 of 425.60Up
Salivary gland10 40 of 4 0.44Down
Crop13 13 of 4 0.60Down
Midgut6 10 of 4 0.20Down
Tubule13 03 of 4 0.50Down
Hindgut11 13 of 4 0.50Down
Heart6 10 of 4 0.27Down
Fat body20 24 of 4 0.84None
Ovary8 04 of 4 0.30Down
Testis5 12 of 4 0.20Down
Male accessory glands197 44 of 4 8.00Up
Virgin spermatheca21 04 of 4 0.86None
Mated spermatheca28 54 of 4 1.14None
Adult carcass10 10 of 4 0.40Down
Larval CNS253 304 of 410.32Up
Larval Salivary gland13 12 of 4 0.55Down
Larval midgut11 13 of 4 0.45Down
Larval tubule8 11 of 4 0.30Down
Larval hindgut11 14 of 4 0.45Down
Larval fat body15 04 of 4 0.60None
Larval trachea6 11 of 4 0.28Down
Larval carcass14 23 of 4 0.57Down
S2 cells (growing)3 00 of 4 0.13Down
Whole fly24 34 of 4

Looking for FBgn0030723. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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