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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030724 through 18771 annotations produced 1 hits



Nipsnap (Nipsnap):

Annotation Number : CG9212
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030724
Gbrowse : chrX:15964394-15967599 (-) // 100.0 //
Probeset : 1635628_s_at
Accessions : protein= NP_573103; /// NP_727931; /// NP_727932;, nucleotide= NM_132875; /// NM_167483; /// NM_167484;
Interpro : 0042802 // identical protein binding // inferred from physical interaction
FlyMine data for FBgn0030724.
BDGP gene expression has embryonic in situ data for Nipsnap: 10 pix of staining in 4 body parts.
BioGrid reports that CG9212 interacts with CG9212 .
TRiP has 1 RNAi stocks for FBgn0030724 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030724 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1179 ± 264 of 4 1.90Up
Head961 ± 624 of 4 1.50Up
Eye701 ± 334 of 4 1.13None
Thoracicoabdominal ganglion797 ± 124 of 4 1.30Up
Salivary gland2404 ± 174 of 4 3.86Up
Crop914 ± 234 of 4 1.50Up
Midgut775 ± 274 of 4 1.20Up
Tubule1435 ± 674 of 4 2.30Up
Hindgut1077 ± 114 of 4 1.70Up
Heart1161 ± 294 of 4 1.87Up
Fat body1828 ± 1844 of 4 2.94Up
Ovary693 ± 94 of 4 1.10None
Testis73 ± 44 of 4 0.10Down
Male accessory glands554 ± 44 of 4 0.90None
Virgin spermatheca1750 ± 844 of 4 2.81Up
Mated spermatheca1408 ± 944 of 4 2.26Up
Adult carcass1181 ± 964 of 4 1.90Up
Larval CNS571 ± 934 of 4 0.92None
Larval Salivary gland1188 ± 294 of 4 1.91Up
Larval midgut1143 ± 464 of 4 1.84Up
Larval tubule944 ± 304 of 4 1.50Up
Larval hindgut804 ± 104 of 4 1.29Up
Larval fat body1647 ± 1554 of 4 2.60Up
Larval trachea419 ± 24 of 4 0.67Down
Larval carcass1840 ± 874 of 4 2.96Up
S2 cells (growing)496 ± 54 of 4 0.80Down
Whole fly622 ± 354 of 4

Looking for FBgn0030724. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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