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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030731 through 18771 annotations produced 1 hits


Annotation Number : CG3415
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030731
Gbrowse : chrX:16165006-16167858 (+) // 100.0 //
Probeset : 1638695_at
Accessions : protein= NP_573109;, nucleotide= NM_132881;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004303 // estradiol 17-beta-dehydrogenase acti
FlyMine data for FBgn0030731.
Homophila reports that CG3415 is a close match (3e-159) to human gene HSD17B4 (NP_000405), a gene associated with D-bifunctional protein deficiency, 261515 (3).
BioGrid reports that CG3415 interacts with CG3713 CG8219 .
VDRC has 3 RNAi stocks for FBgn0030731 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain146 44 of 4 0.40Down
Head496 164 of 4 1.50Up
Eye322 94 of 4 0.95None
Thoracicoabdominal ganglion152 44 of 4 0.50Down
Salivary gland317 184 of 4 0.94None
Crop1470 394 of 4 4.30Up
Midgut1249 474 of 4 3.70Up
Tubule697 434 of 4 2.10Up
Hindgut677 224 of 4 2.00Up
Heart1327 394 of 4 3.91Up
Fat body1424 814 of 4 4.20Up
Ovary79 24 of 4 0.20Down
Testis67 34 of 4 0.20Down
Male accessory glands378 34 of 4 1.10None
Virgin spermatheca1750 824 of 4 5.16Up
Mated spermatheca1418 714 of 4 4.18Up
Adult carcass1079 384 of 4 3.20Up
Larval CNS178 104 of 4 0.53Down
Larval Salivary gland358 164 of 4 1.06None
Larval midgut1603 724 of 4 4.72Up
Larval tubule595 394 of 4 1.80Up
Larval hindgut415 04 of 4 1.22None
Larval fat body485 304 of 4 1.40Up
Larval trachea393 134 of 4 1.16None
Larval carcass344 84 of 4 1.01None
S2 cells (growing)463 34 of 4 1.37Up
Whole fly339 244 of 4

Looking for FBgn0030731. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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