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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030740 through 18771 annotations produced 1 hits



(CG9917):

Annotation Number : CG9917
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030740
Gbrowse : chrX:16215455-16217282 (-) // 100.0 //
Probeset : 1634253_at
Accessions : protein= NP_573117;, nucleotide= NM_132889;
FlyMine data for FBgn0030740.
BDGP gene expression has embryonic in situ data for CG9917: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0030740 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain359 ± 154 of 4 0.70Down
Head786 ± 384 of 4 1.50Up
Eye1147 ± 304 of 4 2.23Up
Thoracicoabdominal ganglion461 ± 54 of 4 0.90None
Salivary gland354 ± 134 of 4 0.69Down
Crop1835 ± 204 of 4 3.60Up
Midgut101 ± 64 of 4 0.20Down
Tubule287 ± 274 of 4 0.60Down
Hindgut659 ± 74 of 4 1.30Up
Heart787 ± 214 of 4 1.53Up
Fat body836 ± 614 of 4 1.63Up
Ovary819 ± 204 of 4 1.60Up
Testis149 ± 44 of 4 0.30Down
Male accessory glands335 ± 114 of 4 0.70Down
Virgin spermatheca406 ± 164 of 4 0.79Down
Mated spermatheca420 ± 74 of 4 0.82Down
Adult carcass912 ± 324 of 4 1.80Up
Larval CNS454 ± 264 of 4 0.88None
Larval Salivary gland384 ± 154 of 4 0.75Down
Larval midgut149 ± 34 of 4 0.29Down
Larval tubule494 ± 264 of 4 1.00None
Larval hindgut431 ± 84 of 4 0.84Down
Larval fat body246 ± 304 of 4 0.50Down
Larval trachea452 ± 294 of 4 0.88None
Larval carcass500 ± 154 of 4 0.97None
S2 cells (growing)2055 ± 164 of 4 4.00Up
Whole fly514 ± 204 of 4

Looking for FBgn0030740. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime