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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030744 through 18771 annotations produced 1 hits



(CG9992):

Annotation Number : CG9992
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030744
Gbrowse : chrX:16275983-16278937 (-) // 100.0 //
Probeset : 1627527_s_at
Accessions : protein= NP_573121; /// NP_727968; /// NP_727969; /// NP_727970; /// NP_727971;, nucleotide= NM_132893; /// NM_167511; /// NM_167512; /// NM_167513; /// NM_167514;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030744.
BDGP gene expression has embryonic in situ data for CG9992: 11 pix of staining in 5 body parts.
VDRC has 1 RNAi stocks for FBgn0030744 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain91 ± 34 of 4 0.50Down
Head60 ± 34 of 4 0.30Down
Eye75 ± 34 of 4 0.38Down
Thoracicoabdominal ganglion71 ± 24 of 4 0.40Down
Salivary gland66 ± 54 of 4 0.34Down
Crop257 ± 54 of 4 1.30Up
Midgut52 ± 54 of 4 0.30Down
Tubule82 ± 14 of 4 0.40Down
Hindgut99 ± 44 of 4 0.50Down
Heart62 ± 44 of 4 0.31Down
Fat body52 ± 44 of 4 0.26Down
Ovary369 ± 94 of 4 1.90Up
Testis271 ± 74 of 4 1.40Up
Male accessory glands111 ± 84 of 4 0.60Down
Virgin spermatheca49 ± 34 of 4 0.25Down
Mated spermatheca57 ± 74 of 4 0.29Down
Adult carcass52 ± 14 of 4 0.30Down
Larval CNS201 ± 104 of 4 1.02None
Larval Salivary gland99 ± 54 of 4 0.51Down
Larval midgut53 ± 54 of 4 0.27Down
Larval tubule167 ± 84 of 4 0.80None
Larval hindgut88 ± 54 of 4 0.45Down
Larval fat body132 ± 184 of 4 0.70Down
Larval trachea335 ± 554 of 4 1.70Up
Larval carcass128 ± 104 of 4 0.65Down
S2 cells (growing)231 ± 34 of 4 1.17None
Whole fly197 ± 124 of 4

Looking for FBgn0030744. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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