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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030747 through 18771 annotations produced 1 hits



(CG4301):

Annotation Number : CG4301
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030747
Gbrowse : chrX:16303110-16308431 (+) // 100.0 //
Probeset : 1630471_at
Accessions : protein= NP_573125;, nucleotide= NM_132897;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred f
FlyMine data for FBgn0030747.
BDGP gene expression has embryonic in situ data for CG4301: 4 pix of staining in 1 body parts.
Homophila reports that CG4301 is a close match (3e-86) to human gene ATP8B1;BRIC;FIC1;PFIC1 (NP_005594), a gene associated with Cholestasis, benign recurrent intrahepatic, 243300 (3);Cholestasis, progressive familial intrahepatic 1, 211600 (3).
VDRC has 1 RNAi stocks for FBgn0030747 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 04 of 4 0.30Down
Head13 11 of 4 0.20Down
Eye9 13 of 4 0.17Down
Thoracicoabdominal ganglion24 14 of 4 0.40None
Salivary gland23 22 of 4 0.42None
Crop17 02 of 4 0.30Down
Midgut694 234 of 412.30Up
Tubule177 134 of 4 3.10Up
Hindgut284 74 of 4 5.00Up
Heart0 00 of 4 0.02Down
Fat body1 10 of 4 0.03Down
Ovary1 00 of 4 0.00Down
Testis7 00 of 4 0.10Down
Male accessory glands3 20 of 4 0.10Down
Virgin spermatheca2 00 of 4 0.05Down
Mated spermatheca1 00 of 4 0.03Down
Adult carcass12 10 of 4 0.20Down
Larval CNS31 64 of 4 0.56None
Larval Salivary gland3 20 of 4 0.06Down
Larval midgut976 444 of 417.29Up
Larval tubule178 74 of 4 3.20Up
Larval hindgut264 124 of 4 4.69Up
Larval fat body7 10 of 4 0.10Down
Larval trachea6 30 of 4 0.12Down
Larval carcass3 00 of 4 0.06Down
S2 cells (growing)5 10 of 4 0.10Down
Whole fly56 114 of 4

Looking for FBgn0030747. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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