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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030748 through 18771 annotations produced 1 hits

Traf3 (Traf-like):

Annotation Number : CG4394
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030748
Gbrowse : chrX:16309101-16311622 (+) // 100.0 //
Probeset : 1633359_a_at
Accessions : protein= NP_573126; /// NP_727976; /// NP_727977;, nucleotide= NM_132898; /// NM_167517; /// NM_167518;
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phys
FlyMine data for FBgn0030748.
BDGP gene expression has embryonic in situ data for Traf3: 8 pix of staining in 2 body parts.
BioGrid reports that CG4394 interacts with CG6470 CG4488 CG4905 CG5053 CG5089 CG5140 CG5272 CG5333 CG5674 CG5701 CG5709 CG5859 CG5923 CG6017 CG6059 CG6163 CG6171 CG6215 CG6477 CG6544 CG6706 CG6779 CG7404 CG7447 CG8301 CG8383 CG8435 CG8851 CG9423 CG9975 .
TRiP has 1 RNAi stocks for FBgn0030748 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030748 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 04 of 4 0.20Down
Head18 34 of 4 0.40Down
Eye9 14 of 4 0.22Down
Thoracicoabdominal ganglion15 24 of 4 0.30Down
Salivary gland60 54 of 4 1.36None
Crop24 34 of 4 0.60Down
Midgut423 94 of 4 9.50Up
Tubule382 384 of 4 8.60Up
Hindgut113 44 of 4 2.50Up
Heart304 44 of 4 6.81Up
Fat body47 164 of 4 1.06None
Ovary10 04 of 4 0.20Down
Testis3 11 of 4 0.10Down
Male accessory glands68 54 of 4 1.50Up
Virgin spermatheca18 14 of 4 0.41Down
Mated spermatheca23 24 of 4 0.53Down
Adult carcass25 24 of 4 0.60Down
Larval CNS28 54 of 4 0.64Down
Larval Salivary gland58 44 of 4 1.31Up
Larval midgut535 284 of 412.00Up
Larval tubule809 144 of 418.10Up
Larval hindgut176 144 of 4 3.95Up
Larval fat body43 54 of 4 1.00None
Larval trachea15 34 of 4 0.34Down
Larval carcass36 44 of 4 0.81None
S2 cells (growing)169 94 of 4 3.80Up
Whole fly44 34 of 4

Looking for FBgn0030748. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime