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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030758 through 18771 annotations produced 1 hits



protein phosphatase from PCR fragment D27 (CanA-14F):

Annotation Number : CG9819
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030758
Gbrowse : chrUextra:3654084-3655035 (+) // 40.69 // /// chrX:16460180-16481160 (-) // 99.96 //
Probeset : 1623931_s_at
Accessions : protein= NP_727985; /// NP_727986;, nucleotide= NM_167523; /// NM_167524;
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/thre
FlyMine data for FBgn0030758.
TRiP has 1 RNAi stocks for FBgn0030758 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030758 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 ± 14 of 4 2.80Up
Head18 ± 24 of 4 0.80None
Eye25 ± 44 of 4 1.15None
Thoracicoabdominal ganglion60 ± 54 of 4 2.70Up
Salivary gland58 ± 74 of 4 2.58Up
Crop26 ± 24 of 4 1.20None
Midgut12 ± 40 of 4 0.50None
Tubule4 ± 00 of 4 0.20Down
Hindgut18 ± 13 of 4 0.80None
Heart82 ± 64 of 4 3.66Up
Fat body49 ± 154 of 4 2.22Up
Ovary21 ± 24 of 4 1.00None
Testis3 ± 10 of 4 0.10Down
Male accessory glands25 ± 31 of 4 1.20None
Virgin spermatheca3 ± 10 of 4 0.16Down
Mated spermatheca2 ± 10 of 4 0.11Down
Adult carcass36 ± 43 of 4 1.60Up
Larval CNS28 ± 24 of 4 1.29None
Larval Salivary gland37 ± 14 of 4 1.66Up
Larval midgut6 ± 20 of 4 0.31Down
Larval tubule7 ± 10 of 4 0.30Down
Larval hindgut12 ± 13 of 4 0.54Down
Larval fat body2 ± 10 of 4 0.10Down
Larval trachea22 ± 14 of 4 1.00None
Larval carcass13 ± 20 of 4 0.62None
S2 cells (growing)18 ± 02 of 4 0.83None
Whole fly22 ± 24 of 4

Looking for FBgn0030758. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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