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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030763 through 18771 annotations produced 1 hits



(CG9782):

Annotation Number : CG9782
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030763
Gbrowse : chrX:16509542-16515619 (-) // 100.0 //
Probeset : 1625941_at
Accessions : protein= NP_573137;, nucleotide= NM_132909;
FlyMine data for FBgn0030763.
BDGP gene expression has embryonic in situ data for CG9782: 32 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030763 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.20None
Head3 10 of 4 0.70None
Eye1 00 of 4 0.23None
Thoracicoabdominal ganglion1 00 of 4 0.40None
Salivary gland7 40 of 4 1.42None
Crop10 20 of 4 2.00None
Midgut11 40 of 4 2.20None
Tubule3 00 of 4 0.70None
Hindgut5 10 of 4 1.00None
Heart3 10 of 4 0.58None
Fat body10 70 of 4 1.92None
Ovary2 10 of 4 0.40None
Testis1 00 of 4 0.40None
Male accessory glands1 00 of 4 0.30None
Virgin spermatheca5 10 of 4 1.04None
Mated spermatheca3 10 of 4 0.60None
Adult carcass13 40 of 4 2.50None
Larval CNS2 10 of 4 0.49None
Larval Salivary gland2 00 of 4 0.40None
Larval midgut17 30 of 4 3.29Up
Larval tubule2 00 of 4 0.40None
Larval hindgut15 40 of 4 2.98None
Larval fat body3 20 of 4 0.70None
Larval trachea11 30 of 4 2.13None
Larval carcass62 34 of 412.10Up
S2 cells (growing)4 10 of 4 0.83None
Whole fly5 20 of 4

Looking for FBgn0030763. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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