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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030768 through 18771 annotations produced 1 hits



(CG9723):

Annotation Number : CG9723
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030768
Gbrowse : chrX:16547251-16549045 (-) // 100.0 //
Probeset : 1641424_at
Accessions : protein= NP_573142;, nucleotide= NM_132914;
FlyMine data for FBgn0030768.
BDGP gene expression has embryonic in situ data for CG9723: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030768 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain77 ± 04 of 4 0.70Down
Head44 ± 44 of 4 0.40Down
Eye77 ± 14 of 4 0.65Down
Thoracicoabdominal ganglion65 ± 24 of 4 0.60Down
Salivary gland79 ± 64 of 4 0.68Down
Crop63 ± 24 of 4 0.50Down
Midgut62 ± 34 of 4 0.50Down
Tubule86 ± 24 of 4 0.70Down
Hindgut58 ± 24 of 4 0.50Down
Heart60 ± 44 of 4 0.51Down
Fat body67 ± 34 of 4 0.57Down
Ovary237 ± 64 of 4 2.00Up
Testis261 ± 84 of 4 2.20Up
Male accessory glands250 ± 74 of 4 2.10Up
Virgin spermatheca71 ± 24 of 4 0.61Down
Mated spermatheca82 ± 14 of 4 0.69Down
Adult carcass55 ± 54 of 4 0.50Down
Larval CNS257 ± 134 of 4 2.18Up
Larval Salivary gland166 ± 34 of 4 1.41Up
Larval midgut92 ± 64 of 4 0.78Down
Larval tubule101 ± 44 of 4 0.90None
Larval hindgut109 ± 94 of 4 0.93None
Larval fat body150 ± 154 of 4 1.30None
Larval trachea84 ± 84 of 4 0.72Down
Larval carcass81 ± 24 of 4 0.69Down
S2 cells (growing)146 ± 34 of 4 1.24Up
Whole fly118 ± 54 of 4

Looking for FBgn0030768. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime