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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030769 through 18771 annotations produced 1 hits


Annotation Number : CG13012
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030769
Gbrowse : chrX:16563073-16564989 (-) // 100.0 //
Probeset : 1625861_at
Accessions : protein= NP_573144;, nucleotide= NM_132916;
FlyMine data for FBgn0030769.
VDRC has 1 RNAi stocks for FBgn0030769 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 14 of 4 1.10None
Head30 24 of 4 1.70Up
Eye22 24 of 4 1.23None
Thoracicoabdominal ganglion14 24 of 4 0.80None
Salivary gland137 84 of 4 7.67Up
Crop16 33 of 4 0.90None
Midgut41 44 of 4 2.30Up
Tubule7 02 of 4 0.40Down
Hindgut13 14 of 4 0.70Down
Heart28 34 of 4 1.58None
Fat body8 33 of 4 0.49Down
Ovary5 02 of 4 0.30Down
Testis14 14 of 4 0.80None
Male accessory glands17 31 of 4 0.90None
Virgin spermatheca6 11 of 4 0.35Down
Mated spermatheca8 13 of 4 0.45Down
Adult carcass23 44 of 4 1.30None
Larval CNS6 14 of 4 0.34Down
Larval Salivary gland5 20 of 4 0.29Down
Larval midgut27 44 of 4 1.51None
Larval tubule8 11 of 4 0.50Down
Larval hindgut7 11 of 4 0.39Down
Larval fat body13 43 of 4 0.80None
Larval trachea11 54 of 4 0.66None
Larval carcass37 114 of 4 2.11None
S2 cells (growing)5 01 of 4 0.30Down
Whole fly17 04 of 4

Looking for FBgn0030769. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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