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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030773 through 18771 annotations produced 1 hits



/// CG9675 (CG9676 /// spheroide):

Annotation Number : CG9676
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030773
Gbrowse : chrX:16593183-16594203 (-) // 100.0 //
Probeset : 1639397_at
Accessions : protein= NP_728008;, nucleotide= NM_167535;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0030773.
BDGP gene expression has embryonic in situ data for CG9676: 4 pix of staining in 1 body parts.
Homophila reports that CG9676 is a close match (6e-12) to human gene FSAP;HABP2;HGFAL;PHBP (NP_004123), a gene associated with {Carotid stenosis, susceptibility to} (3);{Venous thromboembolism, susceptibility to}, 188050 (3).
VDRC has 2 RNAi stocks for FBgn0030773 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 10 of 4 0.00Down
Head2680 ± 2034 of 4 9.50Up
Eye6 ± 20 of 4 0.02Down
Thoracicoabdominal ganglion8 ± 30 of 4 0.00Down
Salivary gland18 ± 30 of 4 0.06Down
Crop5 ± 10 of 4 0.00Down
Midgut33 ± 33 of 4 0.10Down
Tubule13 ± 00 of 4 0.00Down
Hindgut16 ± 22 of 4 0.10Down
Heart7 ± 11 of 4 0.03Down
Fat body12 ± 60 of 4 0.05Down
Ovary4 ± 00 of 4 0.00Down
Testis3 ± 00 of 4 0.00Down
Male accessory glands13 ± 30 of 4 0.00Down
Virgin spermatheca14 ± 02 of 4 0.05Down
Mated spermatheca16 ± 52 of 4 0.06Down
Adult carcass26 ± 122 of 4 0.10Down
Larval CNS10 ± 23 of 4 0.04Down
Larval Salivary gland8 ± 10 of 4 0.03Down
Larval midgut17 ± 21 of 4 0.06Down
Larval tubule8 ± 10 of 4 0.00Down
Larval hindgut11 ± 21 of 4 0.04Down
Larval fat body15 ± 30 of 4 0.10Down
Larval trachea5 ± 41 of 4 0.02Down
Larval carcass7 ± 00 of 4 0.03Down
S2 cells (growing)5 ± 10 of 4 0.02Down
Whole fly283 ± 244 of 4

Looking for FBgn0030773. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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