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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030774 through 18771 annotations produced 2 hits



/// CG9675 (CG9676 /// spheroide):

Annotation Number : CG9676
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030773
Gbrowse : chrX:16593183-16594203 (-) // 100.0 //
Probeset : 1639397_at
Accessions : protein= NP_728008;, nucleotide= NM_167535;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0030773.
BDGP gene expression has embryonic in situ data for CG9676: 4 pix of staining in 1 body parts.
Homophila reports that CG9676 is a close match (6e-12) to human gene FSAP;HABP2;HGFAL;PHBP (NP_004123), a gene associated with {Carotid stenosis, susceptibility to} (3);{Venous thromboembolism, susceptibility to}, 188050 (3).
VDRC has 2 RNAi stocks for FBgn0030773 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 10 of 4 0.00Down
Head2680 2034 of 4 9.50Up
Eye6 20 of 4 0.02Down
Thoracicoabdominal ganglion8 30 of 4 0.00Down
Salivary gland18 30 of 4 0.06Down
Crop5 10 of 4 0.00Down
Midgut33 33 of 4 0.10Down
Tubule13 00 of 4 0.00Down
Hindgut16 22 of 4 0.10Down
Heart7 11 of 4 0.03Down
Fat body12 60 of 4 0.05Down
Ovary4 00 of 4 0.00Down
Testis3 00 of 4 0.00Down
Male accessory glands13 30 of 4 0.00Down
Virgin spermatheca14 02 of 4 0.05Down
Mated spermatheca16 52 of 4 0.06Down
Adult carcass26 122 of 4 0.10Down
Larval CNS10 23 of 4 0.04Down
Larval Salivary gland8 10 of 4 0.03Down
Larval midgut17 21 of 4 0.06Down
Larval tubule8 10 of 4 0.00Down
Larval hindgut11 21 of 4 0.04Down
Larval fat body15 30 of 4 0.10Down
Larval trachea5 41 of 4 0.02Down
Larval carcass7 00 of 4 0.03Down
S2 cells (growing)5 10 of 4 0.02Down
Whole fly283 244 of 4



CG9675 (spheroide):

Annotation Number : CG9675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030774
Gbrowse : chrX:16594478-16595989 (-) // 100.0 //
Probeset : 1624578_at
Accessions : protein= NP_573148;, nucleotide= NM_132920;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0030774.
BDGP gene expression has embryonic in situ data for CG9675: 8 pix of staining in 2 body parts.
Homophila reports that CG9675 is a close match (6e-12) to human gene ADN;CFD (NP_001919), a gene associated with Complement factor D deficiency (3).
TRiP has 1 RNAi stocks for FBgn0030774 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030774 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 10 of 4 0.00Down
Eye1 00 of 4 0.01Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland3 20 of 4 0.02Down
Crop5 10 of 4 0.00Down
Midgut1756 554 of 411.00Up
Tubule8 60 of 4 0.10Down
Hindgut258 34 of 4 1.60Up
Heart1 00 of 4 0.01Down
Fat body2 10 of 4 0.02Down
Ovary1 00 of 4 0.00Down
Testis0 00 of 4 0.00Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca5 22 of 4 0.04Down
Mated spermatheca2 10 of 4 0.02Down
Adult carcass4 10 of 4 0.00Down
Larval CNS1 10 of 4 0.01Down
Larval Salivary gland2 00 of 4 0.02Down
Larval midgut1468 2034 of 4 9.21Up
Larval tubule3 10 of 4 0.00Down
Larval hindgut29 84 of 4 0.18Down
Larval fat body1 00 of 4 0.00Down
Larval trachea1 10 of 4 0.01Down
Larval carcass0 00 of 4 0.01Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly159 204 of 4

Looking for FBgn0030774. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime