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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030776 through 18771 annotations produced 1 hits



(CG4653):

Annotation Number : CG4653
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030776
Gbrowse : chrX:16598120-16599188 (+) // 100.0 //
Probeset : 1625212_at
Accessions : protein= NP_573150;, nucleotide= NM_132922;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0030776.
Homophila reports that CG4653 is a close match (5e-11) to human gene F2 (NP_000497), a gene associated with Dysprothrombinemia (3);Hyperprothrombinemia (3);Hypoprothrombinemia (3).
BioGrid reports that CG4653 interacts with CG9527 .
VDRC has 1 RNAi stocks for FBgn0030776 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 14 of 4 0.00Down
Head9 14 of 4 0.00Down
Eye10 12 of 4 0.02Down
Thoracicoabdominal ganglion13 33 of 4 0.00Down
Salivary gland9 20 of 4 0.02Down
Crop10 11 of 4 0.00Down
Midgut4120 924 of 4 8.70Up
Tubule21 112 of 4 0.00Down
Hindgut989 504 of 4 2.10Up
Heart7 12 of 4 0.02Down
Fat body18 54 of 4 0.04Down
Ovary7 12 of 4 0.00Down
Testis4 00 of 4 0.00Down
Male accessory glands17 23 of 4 0.00Down
Virgin spermatheca11 24 of 4 0.03Down
Mated spermatheca10 13 of 4 0.02Down
Adult carcass14 32 of 4 0.00Down
Larval CNS7 23 of 4 0.02Down
Larval Salivary gland9 22 of 4 0.02Down
Larval midgut2590 3094 of 4 5.46Up
Larval tubule8 21 of 4 0.00Down
Larval hindgut225 564 of 4 0.48None
Larval fat body12 42 of 4 0.00Down
Larval trachea12 34 of 4 0.03Down
Larval carcass13 11 of 4 0.03Down
S2 cells (growing)7 12 of 4 0.02Down
Whole fly474 874 of 4

Looking for FBgn0030776. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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