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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030777 through 18771 annotations produced 1 hits


(CG9672):

Annotation Number : CG9672
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030777
Gbrowse : chrX:16600003-16600903 (-) // 100.0 //
Probeset : 1635525_at
Accessions : protein= NP_573151;, nucleotide= NM_132923;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0030777.
BDGP gene expression has embryonic in situ data for CG9672: 8 pix of staining in 1 body parts.
Homophila reports that CG9672 is a close match (4e-11) to human gene KLK3;KLKB1 (NP_000883), a gene associated with Fletcher factor deficiency (1);Prekallikrein deficiency (3).
VDRC has 2 RNAi stocks for FBgn0030777 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye4 ± 30 of 4 0.01Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland5 ± 20 of 4 0.01Down
Crop1 ± 00 of 4 0.00Down
Midgut4123 ± 1024 of 4 8.60Up
Tubule4 ± 10 of 4 0.00Down
Hindgut37 ± 41 of 4 0.10Down
Heart2 ± 10 of 4 0.00Down
Fat body1 ± 00 of 4 0.00Down
Ovary0 ± 00 of 4 0.00Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands0 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.00Down
Mated spermatheca3 ± 10 of 4 0.01Down
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.00Down
Larval Salivary gland1 ± 00 of 4 0.00Down
Larval midgut4013 ± 1344 of 4 8.36Up
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut7 ± 30 of 4 0.02Down
Larval fat body21 ± 171 of 4 0.00Down
Larval trachea17 ± 311 of 4 0.04Down
Larval carcass1 ± 10 of 4 0.00Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly480 ± 564 of 4

Looking for FBgn0030777. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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