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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030780 through 18771 annotations produced 2 hits



(CG13008):

Annotation Number : CG13008
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030780
Gbrowse : chrX:16605335-16608411 (+) // 100.0 //
Probeset : 1627737_at
Accessions : protein= NP_573154; /// NP_728014;, nucleotide= NM_132926; /// NM_167537;
FlyMine data for FBgn0030780.
VDRC has 5 RNAi stocks for FBgn0030780 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 04 of 4 0.10Down
Head4 ± 01 of 4 0.00Down
Eye5 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion7 ± 12 of 4 0.10Down
Salivary gland14 ± 42 of 4 0.14Down
Crop4 ± 10 of 4 0.00Down
Midgut8 ± 12 of 4 0.10Down
Tubule5 ± 10 of 4 0.10Down
Hindgut5 ± 23 of 4 0.10Down
Heart4 ± 10 of 4 0.04Down
Fat body3 ± 22 of 4 0.03Down
Ovary2 ± 01 of 4 0.00Down
Testis941 ± 244 of 4 9.20Up
Male accessory glands12 ± 11 of 4 0.10Down
Virgin spermatheca5 ± 00 of 4 0.05Down
Mated spermatheca7 ± 11 of 4 0.07Down
Adult carcass11 ± 12 of 4 0.10Down
Larval CNS3 ± 13 of 4 0.04Down
Larval Salivary gland0 ± 00 of 4 0.01Down
Larval midgut7 ± 31 of 4 0.08Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut3 ± 01 of 4 0.04Down
Larval fat body125 ± 674 of 4 1.20None
Larval trachea7 ± 52 of 4 0.08Down
Larval carcass6 ± 04 of 4 0.07Down
S2 cells (growing)3 ± 12 of 4 0.04Down
Whole fly101 ± 134 of 4



(CG13008):

Annotation Number : CG13008
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030780
Gbrowse : chrX:16605335-16608411 (+) // 100.0 //
Probeset : 1636504_a_at
Accessions : protein= NP_573154; /// NP_728014;, nucleotide= NM_132926; /// NM_167537;
FlyMine data for FBgn0030780.
VDRC has 5 RNAi stocks for FBgn0030780 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.10Down
Head1 ± 00 of 4 0.00Down
Eye4 ± 00 of 4 0.09Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.10Down
Salivary gland9 ± 20 of 4 0.18Down
Crop2 ± 00 of 4 0.10Down
Midgut6 ± 10 of 4 0.10Down
Tubule6 ± 10 of 4 0.10Down
Hindgut6 ± 30 of 4 0.10Down
Heart1 ± 00 of 4 0.02Down
Fat body3 ± 20 of 4 0.07Down
Ovary3 ± 10 of 4 0.10Down
Testis682 ± 84 of 413.00Up
Male accessory glands9 ± 10 of 4 0.20Down
Virgin spermatheca8 ± 20 of 4 0.17Down
Mated spermatheca5 ± 10 of 4 0.11Down
Adult carcass9 ± 30 of 4 0.20Down
Larval CNS2 ± 20 of 4 0.05Down
Larval Salivary gland9 ± 20 of 4 0.18Down
Larval midgut8 ± 10 of 4 0.16Down
Larval tubule11 ± 10 of 4 0.20Down
Larval hindgut5 ± 10 of 4 0.10Down
Larval fat body65 ± 263 of 4 1.20None
Larval trachea6 ± 20 of 4 0.13Down
Larval carcass3 ± 00 of 4 0.07Down
S2 cells (growing)7 ± 20 of 4 0.15Down
Whole fly52 ± 34 of 4

Looking for FBgn0030780. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime