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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030787 through 18771 annotations produced 1 hits



(CG9609):

Annotation Number : CG9609
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030787
Gbrowse : chrX:16679397-16681011 (-) // 100.0 //
Probeset : 1633883_at
Accessions : protein= NP_573161;, nucleotide= NM_132933;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003709 // RNA polymerase III transcription f
FlyMine data for FBgn0030787.
Homophila reports that CG9609 is a close match (5e-11) to human gene GLI2;HPE9 (NP_005261), a gene associated with Holoprosencephaly-9, 610829 (3);Pituitary anomalies with holoprosencephaly-like features (3).
TRiP has 1 RNAi stocks for FBgn0030787 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030787 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain191 ± 74 of 4 1.20Up
Head60 ± 34 of 4 0.40Down
Eye73 ± 24 of 4 0.46Down
Thoracicoabdominal ganglion151 ± 44 of 4 1.00None
Salivary gland60 ± 94 of 4 0.38Down
Crop55 ± 34 of 4 0.30Down
Midgut43 ± 40 of 4 0.30Down
Tubule53 ± 34 of 4 0.30Down
Hindgut48 ± 24 of 4 0.30Down
Heart33 ± 14 of 4 0.21Down
Fat body56 ± 44 of 4 0.35Down
Ovary432 ± 74 of 4 2.70Up
Testis54 ± 64 of 4 0.30Down
Male accessory glands111 ± 64 of 4 0.70Down
Virgin spermatheca43 ± 34 of 4 0.27Down
Mated spermatheca45 ± 14 of 4 0.29Down
Adult carcass53 ± 44 of 4 0.30Down
Larval CNS150 ± 74 of 4 0.95None
Larval Salivary gland59 ± 14 of 4 0.38Down
Larval midgut12 ± 50 of 4 0.08Down
Larval tubule41 ± 04 of 4 0.30Down
Larval hindgut34 ± 12 of 4 0.22Down
Larval fat body58 ± 11 of 4 0.40Down
Larval trachea74 ± 64 of 4 0.47Down
Larval carcass34 ± 10 of 4 0.22Down
S2 cells (growing)79 ± 24 of 4 0.50Down
Whole fly158 ± 84 of 4

Looking for FBgn0030787. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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