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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030788 through 18771 annotations produced 1 hits



CG4756 (Sap30):

Annotation Number : CG4756
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030788
Gbrowse : chrX:16681788-16683675 (+) // 100.0 //
Probeset : 1634954_at
Accessions : protein= NP_573162;, nucleotide= NM_132934;
Pathway : 0000118 // histone deacetylase complex // inferred from sequence or structural similarity /// 0005634 // nucleus // infe
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // infer
FlyMine data for FBgn0030788.
BioGrid reports that CG4756 interacts with CG9871 .
VDRC has 2 RNAi stocks for FBgn0030788 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain171 74 of 4 1.20None
Head106 124 of 4 0.70None
Eye85 44 of 4 0.60Down
Thoracicoabdominal ganglion167 124 of 4 1.20None
Salivary gland81 74 of 4 0.57Down
Crop140 104 of 4 1.00None
Midgut87 44 of 4 0.60Down
Tubule126 34 of 4 0.90Down
Hindgut92 24 of 4 0.70None
Heart86 64 of 4 0.61Down
Fat body141 194 of 4 1.00None
Ovary431 74 of 4 3.00Up
Testis25 14 of 4 0.20Down
Male accessory glands103 04 of 4 0.70None
Virgin spermatheca202 204 of 4 1.43None
Mated spermatheca158 84 of 4 1.12None
Adult carcass69 44 of 4 0.50Down
Larval CNS330 354 of 4 2.33Up
Larval Salivary gland181 104 of 4 1.28None
Larval midgut157 154 of 4 1.11None
Larval tubule589 364 of 4 4.20Up
Larval hindgut244 194 of 4 1.73Up
Larval fat body233 314 of 4 1.70None
Larval trachea162 114 of 4 1.15None
Larval carcass172 54 of 4 1.22None
S2 cells (growing)123 34 of 4 0.87None
Whole fly141 164 of 4

Looking for FBgn0030788. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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