FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0030790 through 18771 annotations produced 1 hits

(CG4768):

Annotation Number : CG4768
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030790
Gbrowse : chrX:16686186-16690056 (+) // 100.0 //
Probeset : 1636727_at
Accessions : protein= NP_573164;, nucleotide= NM_132936;
FlyMine data for FBgn0030790.
VDRC has 2 RNAi stocks for FBgn0030790 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	71 ± 4	4 of 4	0.60	Down
Head	28 ± 4	4 of 4	0.20	Down
Eye	24 ± 2	4 of 4	0.20	Down
Thoracicoabdominal ganglion	48 ± 0	4 of 4	0.40	Down
Salivary gland	34 ± 3	4 of 4	0.28	Down
Crop	35 ± 1	4 of 4	0.30	Down
Midgut	35 ± 2	4 of 4	0.30	Down
Tubule	25 ± 1	4 of 4	0.20	Down
Hindgut	30 ± 2	4 of 4	0.20	Down
Heart	25 ± 3	4 of 4	0.21	Down
Fat body	43 ± 6	4 of 4	0.35	Down
Ovary	386 ± 8	4 of 4	3.10	Up
Testis	11 ± 0	4 of 4	0.10	Down
Male accessory glands	38 ± 3	4 of 4	0.30	Down
Virgin spermatheca	13 ± 1	4 of 4	0.11	Down
Mated spermatheca	19 ± 1	4 of 4	0.16	Down
Adult carcass	27 ± 1	4 of 4	0.20	Down
Larval CNS	98 ± 15	4 of 4	0.79	None
Larval Salivary gland	44 ± 2	4 of 4	0.36	Down
Larval midgut	32 ± 2	4 of 4	0.26	Down
Larval tubule	33 ± 3	4 of 4	0.30	Down
Larval hindgut	38 ± 1	4 of 4	0.31	Down
Larval fat body	28 ± 2	4 of 4	0.20	Down
Larval trachea	45 ± 6	4 of 4	0.37	Down
Larval carcass	32 ± 4	4 of 4	0.26	Down
S2 cells (growing)	96 ± 4	4 of 4	0.78	Down
Whole fly	124 ± 7	4 of 4

Looking for FBgn0030790. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720