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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030793 through 18771 annotations produced 1 hits



(CG9125):

Annotation Number : CG32566
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030793
Gbrowse : chrX:16696069-16697284 (-) // 100.0 //
Probeset : 1624253_at
Accessions : protein= NP_996492;, nucleotide= NM_206769;
FlyMine data for FBgn0030793.
VDRC has 1 RNAi stocks for FBgn0030793 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 24 of 4 1.00None
Head49 04 of 4 0.80Down
Eye73 34 of 4 1.13None
Thoracicoabdominal ganglion67 04 of 4 1.00None
Salivary gland33 34 of 4 0.52Down
Crop38 34 of 4 0.60Down
Midgut48 44 of 4 0.70Down
Tubule30 14 of 4 0.50Down
Hindgut35 24 of 4 0.50Down
Heart41 04 of 4 0.64Down
Fat body23 24 of 4 0.37Down
Ovary118 54 of 4 1.80Up
Testis25 14 of 4 0.40Down
Male accessory glands109 24 of 4 1.70Up
Virgin spermatheca25 24 of 4 0.39Down
Mated spermatheca32 14 of 4 0.50Down
Adult carcass41 24 of 4 0.60Down
Larval CNS194 144 of 4 2.99Up
Larval Salivary gland115 64 of 4 1.78Up
Larval midgut53 34 of 4 0.82Down
Larval tubule54 04 of 4 0.80Down
Larval hindgut56 34 of 4 0.87None
Larval fat body54 84 of 4 0.80None
Larval trachea157 154 of 4 2.42Up
Larval carcass61 14 of 4 0.95None
S2 cells (growing)157 64 of 4 2.42Up
Whole fly65 24 of 4

Looking for FBgn0030793. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime