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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030794 through 18771 annotations produced 1 hits



(CG13005):

Annotation Number : CG13005
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030794
Gbrowse : chrX:16697712-16699313 (+) // 100.0 //
Probeset : 1640091_at
Accessions : protein= NP_573168;, nucleotide= NM_132940;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030794.
BDGP gene expression has embryonic in situ data for CG13005: 16 pix of staining in 19 body parts.
BioGrid reports that CG13005 interacts with CG7113 CG7911 CG13526 CG14145 CG14868 CG14931 CG15634 CG33017 CG8173 .
VDRC has 2 RNAi stocks for FBgn0030794 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 14 of 4 0.40Down
Head14 13 of 4 0.30Down
Eye10 13 of 4 0.18Down
Thoracicoabdominal ganglion8 10 of 4 0.20Down
Salivary gland19 12 of 4 0.34Down
Crop12 22 of 4 0.20Down
Midgut8 20 of 4 0.10Down
Tubule6 10 of 4 0.10Down
Hindgut13 14 of 4 0.20Down
Heart5 21 of 4 0.09Down
Fat body8 20 of 4 0.14Down
Ovary114 64 of 4 2.00Up
Testis9 13 of 4 0.20Down
Male accessory glands19 24 of 4 0.30Down
Virgin spermatheca3 10 of 4 0.07Down
Mated spermatheca4 20 of 4 0.08Down
Adult carcass10 31 of 4 0.20Down
Larval CNS17 24 of 4 0.31Down
Larval Salivary gland16 22 of 4 0.29Down
Larval midgut8 10 of 4 0.15Down
Larval tubule12 04 of 4 0.20Down
Larval hindgut13 22 of 4 0.24Down
Larval fat body9 21 of 4 0.20Down
Larval trachea20 24 of 4 0.37Down
Larval carcass9 12 of 4 0.17Down
S2 cells (growing)16 14 of 4 0.30Down
Whole fly57 34 of 4

Looking for FBgn0030794. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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