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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030795 through 18771 annotations produced 1 hits



pickpocket 28 (ppk28):

Annotation Number : CG4805
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030795
Gbrowse : chrX:16700339-16702418 (+) // 100.0 //
Probeset : 1630742_at
Accessions : protein= NP_001014748; /// NP_573169;, nucleotide= NM_001014748; /// NM_132941;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferre
FlyMine data for FBgn0030795.
Homophila reports that CG4805 is a close match (3e-12) to human gene SCNN1B (NP_000327), a gene associated with Liddle syndrome, 177200 (3);Pseudohypoaldosteronism, type I, 264350 (3).
BioGrid reports that CG4805 interacts with CG9539 .
TRiP has 1 RNAi stocks for FBgn0030795 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030795 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 04 of 4 3.20Up
Head5 00 of 4 1.70None
Eye5 02 of 4 1.80None
Thoracicoabdominal ganglion13 04 of 4 4.20Up
Salivary gland12 30 of 4 4.03None
Crop3 00 of 4 1.00None
Midgut5 00 of 4 1.70None
Tubule4 00 of 4 1.40None
Hindgut5 12 of 4 1.90None
Heart2 00 of 4 0.78None
Fat body3 20 of 4 1.07None
Ovary1 10 of 4 0.50None
Testis2 00 of 4 0.90None
Male accessory glands7 12 of 4 2.50Up
Virgin spermatheca2 10 of 4 0.84None
Mated spermatheca0 00 of 4 0.30None
Adult carcass5 10 of 4 1.90None
Larval CNS12 34 of 4 4.16Up
Larval Salivary gland4 10 of 4 1.39None
Larval midgut3 11 of 4 1.05None
Larval tubule1 00 of 4 0.60None
Larval hindgut5 01 of 4 1.66None
Larval fat body3 10 of 4 1.20None
Larval trachea6 11 of 4 2.18None
Larval carcass3 10 of 4 1.00None
S2 cells (growing)30 24 of 4 9.69Up
Whole fly3 10 of 4

Looking for FBgn0030795. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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