Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030797 through 18771 annotations produced 1 hits



(CG13004):

Annotation Number : CG13004
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030797
Gbrowse : chrX:16721145-16722175 (-) // 100.0 //
Probeset : 1626688_at
Accessions : protein= NP_001097006; /// NP_573171;, nucleotide= NM_001103536; /// NM_132943;
FlyMine data for FBgn0030797.
BDGP gene expression has embryonic in situ data for CG13004: 29 pix of staining in 5 body parts.
BioGrid reports that CG13004 interacts with CG13167 .
VDRC has 4 RNAi stocks for FBgn0030797 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 ± 24 of 4 0.30Down
Head32 ± 44 of 4 0.30Down
Eye24 ± 44 of 4 0.20Down
Thoracicoabdominal ganglion17 ± 14 of 4 0.10Down
Salivary gland608 ± 334 of 4 4.88Up
Crop58 ± 54 of 4 0.50Down
Midgut59 ± 84 of 4 0.50Down
Tubule672 ± 494 of 4 5.40Up
Hindgut43 ± 24 of 4 0.30Down
Heart42 ± 44 of 4 0.34Down
Fat body49 ± 74 of 4 0.39Down
Ovary107 ± 14 of 4 0.90None
Testis454 ± 84 of 4 3.60Up
Male accessory glands23 ± 34 of 4 0.20Down
Virgin spermatheca17 ± 04 of 4 0.14Down
Mated spermatheca20 ± 34 of 4 0.16Down
Adult carcass36 ± 34 of 4 0.30Down
Larval CNS19 ± 14 of 4 0.15Down
Larval Salivary gland46 ± 34 of 4 0.37Down
Larval midgut22 ± 24 of 4 0.18Down
Larval tubule441 ± 154 of 4 3.50Up
Larval hindgut279 ± 54 of 4 2.24Up
Larval fat body109 ± 214 of 4 0.90None
Larval trachea15 ± 34 of 4 0.12Down
Larval carcass43 ± 134 of 4 0.35Down
S2 cells (growing)263 ± 104 of 4 2.11Up
Whole fly124 ± 64 of 4

Looking for FBgn0030797. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime