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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030798 through 18771 annotations produced 1 hits


Annotation Number : CG13003
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030798
Gbrowse : chrX:16738837-16747269 (-) // 100.0 //
Probeset : 1630570_at
Accessions : protein= NP_001162779; /// NP_573172;, nucleotide= NM_001169308; /// NM_132944;
FlyMine data for FBgn0030798.
BDGP gene expression has embryonic in situ data for CG13003: 12 pix of staining in 3 body parts.
VDRC has 2 RNAi stocks for FBgn0030798 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 01 of 4 0.20Down
Head60 34 of 4 2.00Up
Eye151 134 of 4 5.15Up
Thoracicoabdominal ganglion7 12 of 4 0.30Down
Salivary gland32 33 of 4 1.09None
Crop6 12 of 4 0.20Down
Midgut9 14 of 4 0.30Down
Tubule5 00 of 4 0.20Down
Hindgut36 24 of 4 1.20None
Heart5 00 of 4 0.19Down
Fat body19 34 of 4 0.65None
Ovary6 01 of 4 0.20Down
Testis4 00 of 4 0.10Down
Male accessory glands14 13 of 4 0.50Down
Virgin spermatheca18 14 of 4 0.63None
Mated spermatheca27 34 of 4 0.94None
Adult carcass95 104 of 4 3.20Up
Larval CNS6 04 of 4 0.23Down
Larval Salivary gland16 24 of 4 0.56Down
Larval midgut13 12 of 4 0.45Down
Larval tubule5 03 of 4 0.20Down
Larval hindgut57 44 of 4 1.96Up
Larval fat body3 10 of 4 0.10Down
Larval trachea687 884 of 423.42Up
Larval carcass223 194 of 4 7.61Up
S2 cells (growing)5 12 of 4 0.19Down
Whole fly29 34 of 4

Looking for FBgn0030798. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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