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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030800 through 18771 annotations produced 1 hits



(CG9104):

Annotation Number : CG9104
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030800
Gbrowse : chrX:16776544-16778358 (-) // 100.0 //
Probeset : 1640290_at
Accessions : protein= NP_573174;, nucleotide= NM_132946;
Interpro : 0016247 // channel regulator activity // inferred from sequence or structural similarity
FlyMine data for FBgn0030800.
BDGP gene expression has embryonic in situ data for CG9104: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0030800 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030800 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 14 of 4 0.80Down
Head42 14 of 4 0.90None
Eye46 54 of 4 0.94None
Thoracicoabdominal ganglion48 14 of 4 1.00None
Salivary gland47 64 of 4 0.97None
Crop64 34 of 4 1.30Up
Midgut47 22 of 4 1.00None
Tubule78 14 of 4 1.60Up
Hindgut42 24 of 4 0.90None
Heart57 34 of 4 1.18None
Fat body53 44 of 4 1.08None
Ovary80 24 of 4 1.60Up
Testis10 13 of 4 0.20Down
Male accessory glands49 74 of 4 1.00None
Virgin spermatheca51 34 of 4 1.05None
Mated spermatheca51 24 of 4 1.05None
Adult carcass49 54 of 4 1.00None
Larval CNS36 44 of 4 0.75Down
Larval Salivary gland61 64 of 4 1.25None
Larval midgut29 12 of 4 0.60Down
Larval tubule58 14 of 4 1.20Up
Larval hindgut40 24 of 4 0.83None
Larval fat body36 63 of 4 0.70None
Larval trachea76 64 of 4 1.56Up
Larval carcass39 24 of 4 0.80Down
S2 cells (growing)56 24 of 4 1.15None
Whole fly49 24 of 4

Looking for FBgn0030800. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime