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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030802 through 18771 annotations produced 1 hits



(CG9099):

Annotation Number : CG9099
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030802
Gbrowse : chrX:16779580-16780540 (-) // 100.0 //
Probeset : 1630745_at
Accessions : protein= NP_573176;, nucleotide= NM_132948;
Interpro : 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding
FlyMine data for FBgn0030802.
BioGrid reports that CG9099 interacts with CG9099 CG9160 CG9888 .
VDRC has 4 RNAi stocks for FBgn0030802 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain245 94 of 4 0.90None
Head264 134 of 4 1.00None
Eye360 114 of 4 1.37Up
Thoracicoabdominal ganglion264 94 of 4 1.00None
Salivary gland182 84 of 4 0.69Down
Crop206 84 of 4 0.80Down
Midgut277 74 of 4 1.10None
Tubule228 74 of 4 0.90Down
Hindgut201 24 of 4 0.80Down
Heart198 24 of 4 0.75Down
Fat body178 214 of 4 0.67Down
Ovary336 54 of 4 1.30Up
Testis154 44 of 4 0.60Down
Male accessory glands390 84 of 4 1.50Up
Virgin spermatheca302 194 of 4 1.15None
Mated spermatheca336 184 of 4 1.28Up
Adult carcass175 34 of 4 0.70Down
Larval CNS362 214 of 4 1.37Up
Larval Salivary gland551 264 of 4 2.09Up
Larval midgut126 24 of 4 0.48Down
Larval tubule293 54 of 4 1.10None
Larval hindgut224 94 of 4 0.85None
Larval fat body216 84 of 4 0.80Down
Larval trachea357 234 of 4 1.35Up
Larval carcass274 154 of 4 1.04None
S2 cells (growing)243 74 of 4 0.92None
Whole fly264 124 of 4

Looking for FBgn0030802. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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