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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030803 through 18771 annotations produced 1 hits



(CG4880):

Annotation Number : CG4880
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030803
Gbrowse : chrX:16780862-16782762 (+) // 100.0 //
Probeset : 1634866_at
Accessions : protein= NP_573177;, nucleotide= NM_132949;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030803.
TRiP has 1 RNAi stocks for FBgn0030803 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030803 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 24 of 4 0.10Down
Head21 ± 34 of 4 0.10Down
Eye6 ± 11 of 4 0.05Down
Thoracicoabdominal ganglion14 ± 21 of 4 0.10Down
Salivary gland12 ± 50 of 4 0.09Down
Crop25 ± 21 of 4 0.20Down
Midgut27 ± 14 of 4 0.20Down
Tubule21 ± 24 of 4 0.10Down
Hindgut16 ± 34 of 4 0.10Down
Heart13 ± 12 of 4 0.09Down
Fat body27 ± 14 of 4 0.19Down
Ovary316 ± 164 of 4 2.20Up
Testis296 ± 104 of 4 2.10Up
Male accessory glands39 ± 63 of 4 0.30Down
Virgin spermatheca37 ± 24 of 4 0.26Down
Mated spermatheca33 ± 24 of 4 0.23Down
Adult carcass16 ± 51 of 4 0.10Down
Larval CNS102 ± 154 of 4 0.72Down
Larval Salivary gland34 ± 24 of 4 0.24Down
Larval midgut32 ± 34 of 4 0.23Down
Larval tubule30 ± 14 of 4 0.20Down
Larval hindgut32 ± 24 of 4 0.23Down
Larval fat body63 ± 174 of 4 0.40Down
Larval trachea21 ± 54 of 4 0.15Down
Larval carcass22 ± 14 of 4 0.16Down
S2 cells (growing)258 ± 104 of 4 1.81Up
Whole fly142 ± 124 of 4

Looking for FBgn0030803. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime