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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030806 through 18771 annotations produced 1 hits



(CG13001):

Annotation Number : CG13001
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030806
Gbrowse : chrX:16835112-16836895 (-) // 100.0 //
Probeset : 1640741_at
Accessions : protein= NP_573181;, nucleotide= NM_132953;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030806.
BioGrid reports that CG13001 interacts with CG8780 CG3052 CG3308 CG4813 CG6276 CG7172 .
VDRC has 2 RNAi stocks for FBgn0030806 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain85 54 of 4 2.90Up
Head22 04 of 4 0.70Down
Eye18 24 of 4 0.62Down
Thoracicoabdominal ganglion40 14 of 4 1.40Up
Salivary gland17 40 of 4 0.60None
Crop15 14 of 4 0.50Down
Midgut4 10 of 4 0.20Down
Tubule12 13 of 4 0.40Down
Hindgut14 14 of 4 0.50Down
Heart11 23 of 4 0.40Down
Fat body10 22 of 4 0.35Down
Ovary73 44 of 4 2.50Up
Testis11 03 of 4 0.40Down
Male accessory glands8 01 of 4 0.30Down
Virgin spermatheca8 02 of 4 0.27Down
Mated spermatheca9 04 of 4 0.31Down
Adult carcass5 10 of 4 0.20Down
Larval CNS150 114 of 4 5.09Up
Larval Salivary gland12 32 of 4 0.41Down
Larval midgut9 01 of 4 0.32Down
Larval tubule11 04 of 4 0.40Down
Larval hindgut18 24 of 4 0.63Down
Larval fat body4 10 of 4 0.10Down
Larval trachea21 24 of 4 0.72Down
Larval carcass13 22 of 4 0.44Down
S2 cells (growing)30 44 of 4 1.03None
Whole fly29 14 of 4

Looking for FBgn0030806. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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