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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030812 through 18771 annotations produced 2 hits



(CG8949):

Annotation Number : Stencil:X:16808883:16807923:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030812
Gbrowse : chrX:16970997-16971957 (-) // 100.0 //
Probeset : 1638383_at
Accessions : protein= NP_573187;, nucleotide= NM_132959;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0030812.
VDRC has 3 RNAi stocks for FBgn0030812 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 ± 74 of 419.00Up
Head5 ± 10 of 4 1.90None
Eye17 ± 24 of 4 6.31Up
Thoracicoabdominal ganglion16 ± 24 of 4 6.00Up
Salivary gland8 ± 40 of 4 3.04None
Crop7 ± 20 of 4 2.50None
Midgut4 ± 20 of 4 1.50None
Tubule3 ± 00 of 4 1.20None
Hindgut5 ± 10 of 4 1.80None
Heart12 ± 30 of 4 4.34None
Fat body10 ± 10 of 4 3.89Up
Ovary8 ± 21 of 4 3.10None
Testis3 ± 10 of 4 1.30None
Male accessory glands7 ± 20 of 4 2.60None
Virgin spermatheca4 ± 10 of 4 1.62None
Mated spermatheca2 ± 00 of 4 0.90None
Adult carcass3 ± 20 of 4 1.10None
Larval CNS26 ± 54 of 4 9.58Up
Larval Salivary gland28 ± 50 of 410.05Up
Larval midgut2 ± 00 of 4 0.88None
Larval tubule4 ± 21 of 4 1.70None
Larval hindgut3 ± 00 of 4 1.29None
Larval fat body11 ± 41 of 4 4.20None
Larval trachea20 ± 32 of 4 7.46Up
Larval carcass4 ± 10 of 4 1.54None
S2 cells (growing)7 ± 21 of 4 2.77None
Whole fly2 ± 10 of 4



(CG8949):

Annotation Number : CG8949
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030812
Gbrowse : chrX:16963824-16969031 (-) // 100.0 //
Probeset : 1641364_at
Accessions : protein= NP_573187;, nucleotide= NM_132959;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0030812.
VDRC has 3 RNAi stocks for FBgn0030812 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 ± 54 of 4 0.90None
Head25 ± 34 of 4 0.40Down
Eye43 ± 74 of 4 0.62Down
Thoracicoabdominal ganglion29 ± 34 of 4 0.40Down
Salivary gland41 ± 24 of 4 0.58Down
Crop33 ± 14 of 4 0.50Down
Midgut32 ± 24 of 4 0.50Down
Tubule29 ± 24 of 4 0.40Down
Hindgut36 ± 34 of 4 0.50Down
Heart32 ± 34 of 4 0.46Down
Fat body24 ± 44 of 4 0.34Down
Ovary166 ± 74 of 4 2.40Up
Testis52 ± 54 of 4 0.70None
Male accessory glands25 ± 14 of 4 0.40Down
Virgin spermatheca24 ± 24 of 4 0.35Down
Mated spermatheca38 ± 54 of 4 0.54Down
Adult carcass31 ± 54 of 4 0.40Down
Larval CNS57 ± 154 of 4 0.81None
Larval Salivary gland44 ± 34 of 4 0.63Down
Larval midgut25 ± 14 of 4 0.36Down
Larval tubule32 ± 14 of 4 0.50Down
Larval hindgut26 ± 14 of 4 0.37Down
Larval fat body27 ± 23 of 4 0.40Down
Larval trachea48 ± 104 of 4 0.68Down
Larval carcass35 ± 34 of 4 0.50Down
S2 cells (growing)69 ± 44 of 4 0.98None
Whole fly70 ± 74 of 4

Looking for FBgn0030812. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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