Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030813 through 18771 annotations produced 1 hits



(CG4949):

Annotation Number : CG4949
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030813
Gbrowse : chrX:16972893-16974940 (+) // 100.0 //
Probeset : 1633764_a_at
Accessions : protein= NP_573188; /// NP_728044;, nucleotide= NM_132960; /// NM_167554;
FlyMine data for FBgn0030813.
BDGP gene expression has embryonic in situ data for CG4949: 28 pix of staining in 5 body parts.
TRiP has 1 RNAi stocks for FBgn0030813 available for purchase.
VDRC has 1 RNAi stocks for FBgn0030813 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 14 of 4 0.30Down
Head18 ± 04 of 4 0.40Down
Eye11 ± 03 of 4 0.25Down
Thoracicoabdominal ganglion19 ± 24 of 4 0.40Down
Salivary gland21 ± 51 of 4 0.44Down
Crop13 ± 21 of 4 0.30Down
Midgut11 ± 00 of 4 0.20Down
Tubule12 ± 01 of 4 0.30Down
Hindgut9 ± 10 of 4 0.20Down
Heart3 ± 11 of 4 0.08Down
Fat body11 ± 41 of 4 0.24Down
Ovary78 ± 14 of 4 1.60Up
Testis17 ± 24 of 4 0.40Down
Male accessory glands18 ± 11 of 4 0.40Down
Virgin spermatheca10 ± 00 of 4 0.22Down
Mated spermatheca7 ± 11 of 4 0.15Down
Adult carcass20 ± 10 of 4 0.40Down
Larval CNS23 ± 54 of 4 0.50Down
Larval Salivary gland8 ± 00 of 4 0.17Down
Larval midgut9 ± 10 of 4 0.19Down
Larval tubule12 ± 11 of 4 0.30Down
Larval hindgut10 ± 10 of 4 0.22Down
Larval fat body15 ± 41 of 4 0.30Down
Larval trachea6 ± 40 of 4 0.13Down
Larval carcass7 ± 20 of 4 0.16Down
S2 cells (growing)11 ± 12 of 4 0.24Down
Whole fly48 ± 34 of 4

Looking for FBgn0030813. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime