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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030814 through 18771 annotations produced 1 hits


(CG4955):

Annotation Number : CG4955
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030814
Gbrowse : chrX:16975538-16977393 (+) // 100.0 //
Probeset : 1628414_at
Accessions : protein= NP_573189;, nucleotide= NM_132961;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030814.
BDGP gene expression has embryonic in situ data for CG4955: 4 pix of staining in 1 body parts.
BioGrid reports that CG4955 interacts with CG5906 .
VDRC has 2 RNAi stocks for FBgn0030814 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland10 ± 40 of 4 0.17Down
Crop2 ± 10 of 4 0.00Down
Midgut4 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.02Down
Fat body3 ± 20 of 4 0.05Down
Ovary0 ± 00 of 4 0.00Down
Testis742 ± 124 of 412.10Up
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.03Down
Mated spermatheca2 ± 00 of 4 0.04Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.03Down
Larval Salivary gland2 ± 00 of 4 0.04Down
Larval midgut3 ± 10 of 4 0.06Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut1 ± 10 of 4 0.03Down
Larval fat body51 ± 211 of 4 0.80None
Larval trachea5 ± 40 of 4 0.08Down
Larval carcass5 ± 10 of 4 0.08Down
S2 cells (growing)2 ± 10 of 4 0.05Down
Whole fly61 ± 34 of 4

Looking for FBgn0030814. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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